Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.34□□□□□ -0.27
H3F3AP84243 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.34□□□□□ -0.27
H3F3AP84243 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.34□□□□□ -0.27
H3F3AP84243 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 AC026954.1-201ENST00000429771 1293 ntBASIC13.34□□□□□ -0.27
H3F3AP84243 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.34□□□□□ -0.27
H3F3AP84243 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.34□□□□□ -0.27
H3F3AP84243 AC119751.2-201ENST00000504529 210 ntBASIC13.34□□□□□ -0.27
H3F3AP84243 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.34□□□□□ -0.27
H3F3AP84243 HILS1-202ENST00000545329 423 ntBASIC13.34□□□□□ -0.27
H3F3AP84243 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC13.34□□□□□ -0.27
H3F3AP84243 RN7SL713P-201ENST00000582127 302 ntBASIC13.34□□□□□ -0.27
H3F3AP84243 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.34□□□□□ -0.27
H3F3AP84243 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.34□□□□□ -0.27
H3F3AP84243 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.34□□□□□ -0.27
H3F3AP84243 OR10B1P-201ENST00000601666 907 ntBASIC13.34□□□□□ -0.27
H3F3AP84243 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.34□□□□□ -0.27
H3F3AP84243 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
H3F3AP84243 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.34□□□□□ -0.27
H3F3AP84243 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.34□□□□□ -0.27
H3F3AP84243 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
H3F3AP84243 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
H3F3AP84243 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
H3F3AP84243 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 AC007292.2-201ENST00000593524 1812 ntBASIC13.34□□□□□ -0.27
H3F3AP84243 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.34□□□□□ -0.27
H3F3AP84243 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.34□□□□□ -0.27
H3F3AP84243 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
H3F3AP84243 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
H3F3AP84243 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
H3F3AP84243 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
H3F3AP84243 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
H3F3AP84243 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
H3F3AP84243 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
H3F3AP84243 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
H3F3AP84243 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.33□□□□□ -0.28
H3F3AP84243 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
H3F3AP84243 AC004945.1-201ENST00000416738 983 ntBASIC13.33□□□□□ -0.28
H3F3AP84243 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.33□□□□□ -0.28
H3F3AP84243 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.33□□□□□ -0.28
H3F3AP84243 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.33□□□□□ -0.28
H3F3AP84243 AP005482.1-201ENST00000563722 1273 ntBASIC13.33□□□□□ -0.28
H3F3AP84243 AC073413.1-201ENST00000603927 732 ntBASIC13.33□□□□□ -0.28
H3F3AP84243 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.33□□□□□ -0.28
H3F3AP84243 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.33□□□□□ -0.28
H3F3AP84243 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
H3F3AP84243 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
H3F3AP84243 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.33□□□□□ -0.28
H3F3AP84243 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.28
H3F3AP84243 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
H3F3AP84243 AL354989.2-201ENST00000435838 1540 ntBASIC13.33□□□□□ -0.28
H3F3AP84243 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
H3F3AP84243 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
H3F3AP84243 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms