Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC10.32□□□□□ -0.76
PRKDCP78527 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 OR4C14P-201ENST00000440929 923 ntBASIC10.32□□□□□ -0.76
PRKDCP78527 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC10.32□□□□□ -0.76
PRKDCP78527 OR2A1-AS1-203ENST00000468575 568 ntBASIC10.32□□□□□ -0.76
PRKDCP78527 RNA5SP420-201ENST00000516997 137 ntBASIC10.32□□□□□ -0.76
PRKDCP78527 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC10.32□□□□□ -0.76
PRKDCP78527 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC10.32□□□□□ -0.76
PRKDCP78527 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC10.32□□□□□ -0.76
PRKDCP78527 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC10.32□□□□□ -0.76
PRKDCP78527 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC10.32□□□□□ -0.76
PRKDCP78527 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 AC073210.1-201ENST00000414799 232 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 AL359092.2-201ENST00000423330 585 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC10.31□□□□□ -0.76
PRKDCP78527 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 AC005011.1-201ENST00000455206 210 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 CETN3-205ENST00000522842 664 ntTSL 2 BASIC10.31□□□□□ -0.76
PRKDCP78527 AL136298.3-201ENST00000556746 445 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 AC005777.1-201ENST00000588332 187 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 AC010319.4-201ENST00000593957 691 ntTSL 3 BASIC10.31□□□□□ -0.76
PRKDCP78527 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC10.31□□□□□ -0.76
PRKDCP78527 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC10.31□□□□□ -0.76
PRKDCP78527 AL596087.1-201ENST00000400979 1969 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 HNRNPA1P59-201ENST00000430583 918 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC10.31□□□□□ -0.76
PRKDCP78527 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC10.31□□□□□ -0.76
PRKDCP78527 AL359219.1-201ENST00000556311 934 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 FAM223B-202ENST00000598177 713 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 AC241585.2-202ENST00000621798 1015 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 FAM223A-202ENST00000625204 713 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC10.31□□□□□ -0.76
PRKDCP78527 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC10.31□□□□□ -0.76
PRKDCP78527 CCND3P1-201ENST00000438347 580 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 ABCD1P3-201ENST00000562927 605 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 AC090616.6-202ENST00000583601 1088 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 AL359091.4-201ENST00000610052 409 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 POLL-206ENST00000370172 2308 ntTSL 2 BASIC10.31□□□□□ -0.76
PRKDCP78527 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC10.31□□□□□ -0.76
PRKDCP78527 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC10.31□□□□□ -0.76
PRKDCP78527 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC10.31□□□□□ -0.76
PRKDCP78527 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC10.31□□□□□ -0.76
PRKDCP78527 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 AC032044.1-201ENST00000570924 570 ntTSL 4 BASIC10.31□□□□□ -0.76
PRKDCP78527 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC10.31□□□□□ -0.76
PRKDCP78527 TIMM23-201ENST00000580018 1222 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
PRKDCP78527 RN7SL480P-201ENST00000581481 294 ntBASIC10.31□□□□□ -0.76
PRKDCP78527 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC10.31□□□□□ -0.76
PRKDCP78527 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC10.3□□□□□ -0.76
PRKDCP78527 AC097474.1-201ENST00000506481 1371 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC10.3□□□□□ -0.76
PRKDCP78527 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC10.3□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms