Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 STRN-202ENST00000379213 2254 ntTSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
ABCA4P78363 AC078875.1-201ENST00000431907 724 ntBASIC12.82□□□□□ -0.36
ABCA4P78363 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC12.82□□□□□ -0.36
ABCA4P78363 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC12.82□□□□□ -0.36
ABCA4P78363 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC12.82□□□□□ -0.36
ABCA4P78363 AC007718.1-201ENST00000621078 280 ntBASIC12.82□□□□□ -0.36
ABCA4P78363 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC12.82□□□□□ -0.36
ABCA4P78363 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC12.82□□□□□ -0.36
ABCA4P78363 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC12.81□□□□□ -0.36
ABCA4P78363 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA4P78363 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC12.81□□□□□ -0.36
ABCA4P78363 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC12.81□□□□□ -0.36
ABCA4P78363 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC12.81□□□□□ -0.36
ABCA4P78363 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA4P78363 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA4P78363 AC009779.1-201ENST00000551138 283 ntBASIC12.81□□□□□ -0.36
ABCA4P78363 NAT9-211ENST00000580632 799 ntTSL 3 BASIC12.81□□□□□ -0.36
ABCA4P78363 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC12.81□□□□□ -0.36
ABCA4P78363 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC12.81□□□□□ -0.36
ABCA4P78363 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC12.81□□□□□ -0.36
ABCA4P78363 AP001065.2-201ENST00000617205 644 ntBASIC12.81□□□□□ -0.36
ABCA4P78363 AL136295.7-201ENST00000619226 1200 ntBASIC12.81□□□□□ -0.36
ABCA4P78363 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA4P78363 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA4P78363 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA4P78363 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA4P78363 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
ABCA4P78363 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC12.81□□□□□ -0.36
ABCA4P78363 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC12.81□□□□□ -0.36
ABCA4P78363 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
ABCA4P78363 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
ABCA4P78363 RPL13AP19-201ENST00000434320 584 ntBASIC12.81□□□□□ -0.36
ABCA4P78363 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA4P78363 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC12.81□□□□□ -0.36
ABCA4P78363 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
ABCA4P78363 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ABCA4P78363 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA4P78363 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA4P78363 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC12.8□□□□□ -0.36
ABCA4P78363 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC12.8□□□□□ -0.36
ABCA4P78363 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA4P78363 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC12.8□□□□□ -0.36
ABCA4P78363 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
ABCA4P78363 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA4P78363 AL157791.1-201ENST00000553667 1699 ntBASIC12.8□□□□□ -0.36
ABCA4P78363 E2F3P2-201ENST00000447755 1422 ntBASIC12.8□□□□□ -0.36
ABCA4P78363 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
ABCA4P78363 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC12.8□□□□□ -0.36
ABCA4P78363 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
ABCA4P78363 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC12.8□□□□□ -0.36
ABCA4P78363 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms