Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 AC055811.4-201ENST00000624039 1754 ntBASIC14.7□□□□□ -0.06
PKNOX1P55347 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.69□□□□□ -0.06
PKNOX1P55347 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.69□□□□□ -0.06
PKNOX1P55347 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
PKNOX1P55347 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.69□□□□□ -0.06
PKNOX1P55347 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.69□□□□□ -0.06
PKNOX1P55347 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.69□□□□□ -0.06
PKNOX1P55347 MEP1AP4-201ENST00000423244 1087 ntBASIC14.69□□□□□ -0.06
PKNOX1P55347 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.69□□□□□ -0.06
PKNOX1P55347 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.69□□□□□ -0.06
PKNOX1P55347 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.69□□□□□ -0.06
PKNOX1P55347 VDAC1P7-201ENST00000462417 847 ntBASIC14.69□□□□□ -0.06
PKNOX1P55347 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.69□□□□□ -0.06
PKNOX1P55347 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.69□□□□□ -0.06
PKNOX1P55347 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.69□□□□□ -0.06
PKNOX1P55347 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.69□□□□□ -0.06
PKNOX1P55347 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.69□□□□□ -0.06
PKNOX1P55347 AL662799.1-202ENST00000614205 422 ntBASIC14.69□□□□□ -0.06
PKNOX1P55347 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
PKNOX1P55347 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.69□□□□□ -0.06
PKNOX1P55347 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.69□□□□□ -0.06
PKNOX1P55347 PRSS30P-206ENST00000641773 873 ntBASIC14.69□□□□□ -0.06
PKNOX1P55347 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.69□□□□□ -0.06
PKNOX1P55347 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.69□□□□□ -0.06
PKNOX1P55347 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
PKNOX1P55347 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.69□□□□□ -0.06
PKNOX1P55347 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.69□□□□□ -0.06
PKNOX1P55347 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.69□□□□□ -0.06
PKNOX1P55347 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.69□□□□□ -0.06
PKNOX1P55347 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 AL359881.3-201ENST00000602640 1721 ntBASIC14.69□□□□□ -0.06
PKNOX1P55347 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PKNOX1P55347 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.68□□□□□ -0.06
PKNOX1P55347 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
PKNOX1P55347 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.68□□□□□ -0.06
PKNOX1P55347 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
PKNOX1P55347 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
PKNOX1P55347 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.68□□□□□ -0.06
PKNOX1P55347 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.68□□□□□ -0.06
PKNOX1P55347 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 METTL21AP1-201ENST00000438852 635 ntBASIC14.68□□□□□ -0.06
PKNOX1P55347 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 TPRX2P-201ENST00000535362 881 ntBASIC14.68□□□□□ -0.06
PKNOX1P55347 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.68□□□□□ -0.06
PKNOX1P55347 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.68□□□□□ -0.06
PKNOX1P55347 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.68□□□□□ -0.06
PKNOX1P55347 RRP7BP-205ENST00000566851 833 ntBASIC14.68□□□□□ -0.06
PKNOX1P55347 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.68□□□□□ -0.06
PKNOX1P55347 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.68□□□□□ -0.06
PKNOX1P55347 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.68□□□□□ -0.06
PKNOX1P55347 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
PKNOX1P55347 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.68□□□□□ -0.06
PKNOX1P55347 AC023511.2-201ENST00000618803 211 ntBASIC14.68□□□□□ -0.06
PKNOX1P55347 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
PKNOX1P55347 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
PKNOX1P55347 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
PKNOX1P55347 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
PKNOX1P55347 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.68□□□□□ -0.06
PKNOX1P55347 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms