Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.14□□□□□ -0.15
CLK1P49759 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.14□□□□□ -0.15
CLK1P49759 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.14□□□□□ -0.15
CLK1P49759 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLK1P49759 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLK1P49759 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.13□□□□□ -0.15
CLK1P49759 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.13□□□□□ -0.15
CLK1P49759 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CLK1P49759 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.13□□□□□ -0.15
CLK1P49759 AC092135.3-201ENST00000624151 1846 ntBASIC14.13□□□□□ -0.15
CLK1P49759 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.13□□□□□ -0.15
CLK1P49759 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 TP73-211ENST00000604074 4806 ntTSL 5 BASIC14.13□□□□□ -0.15
CLK1P49759 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.13□□□□□ -0.15
CLK1P49759 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.13□□□□□ -0.15
CLK1P49759 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.13□□□□□ -0.15
CLK1P49759 MEP1AP4-201ENST00000423244 1087 ntBASIC14.13□□□□□ -0.15
CLK1P49759 KRT18P43-201ENST00000469825 1281 ntBASIC14.13□□□□□ -0.15
CLK1P49759 MEIS3P1-201ENST00000495167 958 ntBASIC14.13□□□□□ -0.15
CLK1P49759 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.13□□□□□ -0.15
CLK1P49759 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.13□□□□□ -0.15
CLK1P49759 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.13□□□□□ -0.15
CLK1P49759 AC135586.1-201ENST00000539323 574 ntBASIC14.13□□□□□ -0.15
CLK1P49759 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.13□□□□□ -0.15
CLK1P49759 AC015910.1-201ENST00000579400 975 ntBASIC14.13□□□□□ -0.15
CLK1P49759 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.13□□□□□ -0.15
CLK1P49759 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CLK1P49759 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.13□□□□□ -0.15
CLK1P49759 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CLK1P49759 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.13□□□□□ -0.15
CLK1P49759 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC14.13□□□□□ -0.15
CLK1P49759 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.13□□□□□ -0.15
CLK1P49759 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.13□□□□□ -0.15
CLK1P49759 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.13□□□□□ -0.15
CLK1P49759 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CLK1P49759 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CLK1P49759 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLK1P49759 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.12□□□□□ -0.15
CLK1P49759 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 AC097359.2-201ENST00000604992 2389 ntBASIC14.12□□□□□ -0.15
CLK1P49759 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
CLK1P49759 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.12□□□□□ -0.15
CLK1P49759 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 WASH3P-207ENST00000560956 1394 ntBASIC14.12□□□□□ -0.15
CLK1P49759 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.12□□□□□ -0.15
CLK1P49759 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.12□□□□□ -0.15
CLK1P49759 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.12□□□□□ -0.15
CLK1P49759 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.12□□□□□ -0.15
CLK1P49759 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.12□□□□□ -0.15
CLK1P49759 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.12□□□□□ -0.15
CLK1P49759 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CLK1P49759 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.12□□□□□ -0.15
CLK1P49759 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
CLK1P49759 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.12□□□□□ -0.15
CLK1P49759 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.12□□□□□ -0.15
CLK1P49759 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.12□□□□□ -0.15
CLK1P49759 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.12□□□□□ -0.15
CLK1P49759 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.12□□□□□ -0.15
CLK1P49759 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.12□□□□□ -0.15
CLK1P49759 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.12□□□□□ -0.15
CLK1P49759 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.12□□□□□ -0.15
CLK1P49759 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.12□□□□□ -0.15
CLK1P49759 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLK1P49759 SRD5A3P1-201ENST00000603021 949 ntBASIC14.12□□□□□ -0.15
CLK1P49759 LINC01115-203ENST00000606068 577 ntBASIC14.12□□□□□ -0.15
CLK1P49759 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.12□□□□□ -0.15
CLK1P49759 AJ011932.1-201ENST00000621707 465 ntBASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms