Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MEX3B-202ENST00000558133 4333 ntBASIC13.2□□□□□ -0.3
SOX2P48431 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
SOX2P48431 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
SOX2P48431 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC13.2□□□□□ -0.3
SOX2P48431 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.2□□□□□ -0.3
SOX2P48431 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC13.2□□□□□ -0.3
SOX2P48431 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC13.2□□□□□ -0.3
SOX2P48431 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC13.2□□□□□ -0.3
SOX2P48431 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC13.2□□□□□ -0.3
SOX2P48431 SDHAP3-202ENST00000515467 728 ntBASIC13.2□□□□□ -0.3
SOX2P48431 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC13.2□□□□□ -0.3
SOX2P48431 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
SOX2P48431 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
SOX2P48431 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC13.2□□□□□ -0.3
SOX2P48431 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.2□□□□□ -0.3
SOX2P48431 AC000095.1-201ENST00000603208 874 ntBASIC13.2□□□□□ -0.3
SOX2P48431 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 AC004461.2-201ENST00000629517 803 ntBASIC13.2□□□□□ -0.3
SOX2P48431 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
SOX2P48431 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC13.2□□□□□ -0.3
SOX2P48431 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.2□□□□□ -0.3
SOX2P48431 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.2□□□□□ -0.3
SOX2P48431 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.2□□□□□ -0.3
SOX2P48431 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
SOX2P48431 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
SOX2P48431 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.2□□□□□ -0.3
SOX2P48431 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.2□□□□□ -0.3
SOX2P48431 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
SOX2P48431 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.2□□□□□ -0.3
SOX2P48431 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SOX2P48431 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
SOX2P48431 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SOX2P48431 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
SOX2P48431 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.19□□□□□ -0.3
SOX2P48431 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
SOX2P48431 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
SOX2P48431 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.19□□□□□ -0.3
SOX2P48431 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX2P48431 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC13.19□□□□□ -0.3
SOX2P48431 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC13.19□□□□□ -0.3
SOX2P48431 AC112482.1-201ENST00000492080 688 ntBASIC13.19□□□□□ -0.3
SOX2P48431 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX2P48431 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX2P48431 AC069262.1-201ENST00000539058 672 ntBASIC13.19□□□□□ -0.3
SOX2P48431 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC13.19□□□□□ -0.3
SOX2P48431 AC044860.1-202ENST00000559481 777 ntBASIC13.19□□□□□ -0.3
SOX2P48431 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC13.19□□□□□ -0.3
SOX2P48431 AL671883.3-201ENST00000603274 991 ntBASIC13.19□□□□□ -0.3
SOX2P48431 COQ4-205ENST00000609948 956 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX2P48431 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC13.19□□□□□ -0.3
SOX2P48431 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.19□□□□□ -0.3
SOX2P48431 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX2P48431 RERG-209ENST00000546331 1383 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX2P48431 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
SOX2P48431 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
SOX2P48431 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
SOX2P48431 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms