Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
HMGA1P17096 NCR3-202ENST00000376071 541 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 PRKXP1-201ENST00000561423 1122 ntBASIC15.28■□□□□ 0.04
HMGA1P17096 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.28■□□□□ 0.04
HMGA1P17096 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC15.28■□□□□ 0.04
HMGA1P17096 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.28■□□□□ 0.04
HMGA1P17096 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGA1P17096 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGA1P17096 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGA1P17096 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGA1P17096 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGA1P17096 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC15.27■□□□□ 0.04
HMGA1P17096 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGA1P17096 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGA1P17096 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGA1P17096 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGA1P17096 AHCYP4-201ENST00000419201 1315 ntBASIC15.27■□□□□ 0.04
HMGA1P17096 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGA1P17096 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGA1P17096 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
HMGA1P17096 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGA1P17096 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.27■□□□□ 0.04
HMGA1P17096 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGA1P17096 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
HMGA1P17096 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGA1P17096 UFM1-202ENST00000379649 846 ntTSL 4 BASIC15.27■□□□□ 0.04
HMGA1P17096 GGCT-203ENST00000409144 836 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGA1P17096 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGA1P17096 ST13P19-201ENST00000442505 1124 ntBASIC15.27■□□□□ 0.04
HMGA1P17096 MAGEA5-201ENST00000446757 942 ntBASIC15.27■□□□□ 0.04
HMGA1P17096 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGA1P17096 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGA1P17096 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGA1P17096 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGA1P17096 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
HMGA1P17096 RN7SL190P-201ENST00000582519 257 ntBASIC15.27■□□□□ 0.04
HMGA1P17096 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC15.27■□□□□ 0.04
HMGA1P17096 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGA1P17096 HPN-206ENST00000597419 1212 ntTSL 5 BASIC15.27■□□□□ 0.04
HMGA1P17096 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC15.27■□□□□ 0.04
HMGA1P17096 AC128714.1-201ENST00000637035 887 ntBASIC15.27■□□□□ 0.04
HMGA1P17096 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HMGA1P17096 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGA1P17096 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGA1P17096 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.03
HMGA1P17096 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGA1P17096 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HMGA1P17096 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.27■□□□□ 0.03
HMGA1P17096 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.27■□□□□ 0.03
HMGA1P17096 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HMGA1P17096 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.27■□□□□ 0.03
HMGA1P17096 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGA1P17096 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.27■□□□□ 0.03
HMGA1P17096 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
HMGA1P17096 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGA1P17096 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGA1P17096 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGA1P17096 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HMGA1P17096 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGA1P17096 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.27■□□□□ 0.03
HMGA1P17096 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.26■□□□□ 0.03
HMGA1P17096 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGA1P17096 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGA1P17096 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms