Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 TREML5P-201ENST00000421694 576 ntBASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 AC004967.1-201ENST00000453589 447 ntBASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 AC025678.2-201ENST00000562061 970 ntBASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 AC004449.1-201ENST00000564240 433 ntBASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 AL049840.4-201ENST00000602422 811 ntBASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 AL158211.3-201ENST00000607385 239 ntBASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 CICP16-201ENST00000502609 2813 ntBASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 BTBD7P1-201ENST00000447253 1453 ntBASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 AC009477.1-201ENST00000452936 217 ntBASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 VDAC1P7-201ENST00000462417 847 ntBASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 AC036164.1-201ENST00000570544 333 ntBASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 SRD5A3P1-201ENST00000603021 949 ntBASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 KRT8P24-201ENST00000560290 1559 ntBASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM49D1C9J1S8 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms