Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 EIF2B5-202ENST00000432569 984 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 AC025594.1-201ENST00000469533 543 ntBASIC11.26□□□□□ -0.61
COL6A5A8TX70 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 LINC00244-201ENST00000625073 613 ntBASIC11.26□□□□□ -0.61
COL6A5A8TX70 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 ZBED1P1-201ENST00000502364 1930 ntBASIC11.26□□□□□ -0.61
COL6A5A8TX70 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 AGGF1P1-201ENST00000509500 2073 ntBASIC11.26□□□□□ -0.61
COL6A5A8TX70 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 SIRPB3P-201ENST00000340424 1216 ntBASIC11.26□□□□□ -0.61
COL6A5A8TX70 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 PSAT1P2-201ENST00000426107 972 ntBASIC11.26□□□□□ -0.61
COL6A5A8TX70 PTPA-215ENST00000432124 567 ntTSL 4 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 ZNF877P-201ENST00000437614 612 ntBASIC11.26□□□□□ -0.61
COL6A5A8TX70 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 RN7SL128P-201ENST00000467883 305 ntBASIC11.26□□□□□ -0.61
COL6A5A8TX70 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 AC004923.3-201ENST00000527532 355 ntBASIC11.26□□□□□ -0.61
COL6A5A8TX70 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 HNRNPA1P2-207ENST00000432375 960 ntBASIC11.25□□□□□ -0.61
COL6A5A8TX70 RPSAP12-201ENST00000435879 888 ntBASIC11.25□□□□□ -0.61
COL6A5A8TX70 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 CAP2-207ENST00000493172 861 ntTSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 KRT127P-201ENST00000547183 433 ntBASIC11.25□□□□□ -0.61
COL6A5A8TX70 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 SNORD3B-1-201ENST00000577988 758 ntBASIC11.25□□□□□ -0.61
COL6A5A8TX70 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC11.25□□□□□ -0.61
COL6A5A8TX70 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 ILF3-AS1-201ENST00000591501 1983 ntBASIC11.25□□□□□ -0.61
COL6A5A8TX70 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms