Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USE1Q9NZ43 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USE1Q9NZ43 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.22■□□□□ 0.99
USE1Q9NZ43 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USE1Q9NZ43 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USE1Q9NZ43 ABHD17AP4-201ENST00000411545 909 ntBASIC21.22■□□□□ 0.99
USE1Q9NZ43 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USE1Q9NZ43 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USE1Q9NZ43 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USE1Q9NZ43 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
USE1Q9NZ43 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USE1Q9NZ43 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.22■□□□□ 0.99
USE1Q9NZ43 FOXO3B-201ENST00000395675 1928 ntBASIC21.21■□□□□ 0.99
USE1Q9NZ43 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
USE1Q9NZ43 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
USE1Q9NZ43 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
USE1Q9NZ43 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USE1Q9NZ43 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.21■□□□□ 0.99
USE1Q9NZ43 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
USE1Q9NZ43 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.21■□□□□ 0.99
USE1Q9NZ43 AL157400.5-201ENST00000507624 621 ntBASIC21.21■□□□□ 0.99
USE1Q9NZ43 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USE1Q9NZ43 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.21■□□□□ 0.99
USE1Q9NZ43 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
USE1Q9NZ43 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USE1Q9NZ43 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USE1Q9NZ43 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
USE1Q9NZ43 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
USE1Q9NZ43 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.2■□□□□ 0.98
USE1Q9NZ43 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USE1Q9NZ43 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USE1Q9NZ43 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.2■□□□□ 0.98
USE1Q9NZ43 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
USE1Q9NZ43 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
USE1Q9NZ43 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USE1Q9NZ43 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
USE1Q9NZ43 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USE1Q9NZ43 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USE1Q9NZ43 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USE1Q9NZ43 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USE1Q9NZ43 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
USE1Q9NZ43 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.19■□□□□ 0.98
USE1Q9NZ43 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USE1Q9NZ43 ZNRF2P2-203ENST00000454624 420 ntBASIC21.19■□□□□ 0.98
USE1Q9NZ43 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USE1Q9NZ43 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
USE1Q9NZ43 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USE1Q9NZ43 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USE1Q9NZ43 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.19■□□□□ 0.98
USE1Q9NZ43 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USE1Q9NZ43 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
USE1Q9NZ43 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USE1Q9NZ43 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USE1Q9NZ43 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.18■□□□□ 0.98
USE1Q9NZ43 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.17■□□□□ 0.98
USE1Q9NZ43 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USE1Q9NZ43 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USE1Q9NZ43 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.17■□□□□ 0.98
USE1Q9NZ43 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USE1Q9NZ43 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USE1Q9NZ43 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USE1Q9NZ43 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.17■□□□□ 0.98
USE1Q9NZ43 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USE1Q9NZ43 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
USE1Q9NZ43 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USE1Q9NZ43 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
USE1Q9NZ43 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.16■□□□□ 0.98
USE1Q9NZ43 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USE1Q9NZ43 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USE1Q9NZ43 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USE1Q9NZ43 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USE1Q9NZ43 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
USE1Q9NZ43 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USE1Q9NZ43 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
USE1Q9NZ43 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
USE1Q9NZ43 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USE1Q9NZ43 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
USE1Q9NZ43 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
USE1Q9NZ43 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USE1Q9NZ43 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
USE1Q9NZ43 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USE1Q9NZ43 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
USE1Q9NZ43 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USE1Q9NZ43 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
USE1Q9NZ43 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
USE1Q9NZ43 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USE1Q9NZ43 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.15■□□□□ 0.98
USE1Q9NZ43 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.14■□□□□ 0.98
USE1Q9NZ43 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
USE1Q9NZ43 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
USE1Q9NZ43 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.14■□□□□ 0.97
USE1Q9NZ43 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.14■□□□□ 0.97
USE1Q9NZ43 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USE1Q9NZ43 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USE1Q9NZ43 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
USE1Q9NZ43 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USE1Q9NZ43 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
USE1Q9NZ43 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USE1Q9NZ43 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.14■□□□□ 0.97
USE1Q9NZ43 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms