Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
TM9SF3Q9HD45 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.89■■□□□ 1.25
TM9SF3Q9HD45 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC22.89■■□□□ 1.25
TM9SF3Q9HD45 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
TM9SF3Q9HD45 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
TM9SF3Q9HD45 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC22.88■■□□□ 1.25
TM9SF3Q9HD45 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
TM9SF3Q9HD45 AL355001.2-201ENST00000620617 1191 ntBASIC22.88■■□□□ 1.25
TM9SF3Q9HD45 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
TM9SF3Q9HD45 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.87■■□□□ 1.25
TM9SF3Q9HD45 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.87■■□□□ 1.25
TM9SF3Q9HD45 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TM9SF3Q9HD45 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.87■■□□□ 1.25
TM9SF3Q9HD45 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC22.87■■□□□ 1.25
TM9SF3Q9HD45 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TM9SF3Q9HD45 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC22.87■■□□□ 1.25
TM9SF3Q9HD45 RARRES2P6-201ENST00000567333 442 ntBASIC22.87■■□□□ 1.25
TM9SF3Q9HD45 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TM9SF3Q9HD45 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TM9SF3Q9HD45 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC22.86■■□□□ 1.25
TM9SF3Q9HD45 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TM9SF3Q9HD45 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
TM9SF3Q9HD45 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
TM9SF3Q9HD45 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
TM9SF3Q9HD45 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TM9SF3Q9HD45 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TM9SF3Q9HD45 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
TM9SF3Q9HD45 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TM9SF3Q9HD45 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
TM9SF3Q9HD45 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
TM9SF3Q9HD45 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
TM9SF3Q9HD45 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC22.84■■□□□ 1.25
TM9SF3Q9HD45 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
TM9SF3Q9HD45 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
TM9SF3Q9HD45 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
TM9SF3Q9HD45 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC22.84■■□□□ 1.25
TM9SF3Q9HD45 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC22.84■■□□□ 1.25
TM9SF3Q9HD45 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC22.84■■□□□ 1.25
TM9SF3Q9HD45 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.84■■□□□ 1.25
TM9SF3Q9HD45 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
TM9SF3Q9HD45 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
TM9SF3Q9HD45 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.83■■□□□ 1.25
TM9SF3Q9HD45 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
TM9SF3Q9HD45 HYI-206ENST00000372434 1025 ntTSL 5 BASIC22.83■■□□□ 1.25
TM9SF3Q9HD45 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
TM9SF3Q9HD45 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC22.83■■□□□ 1.25
TM9SF3Q9HD45 DUX4L19-201ENST00000557448 1267 ntBASIC22.83■■□□□ 1.25
TM9SF3Q9HD45 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC22.83■■□□□ 1.25
TM9SF3Q9HD45 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.83■■□□□ 1.24
TM9SF3Q9HD45 AC131274.2-201ENST00000580697 1507 ntBASIC22.82■■□□□ 1.24
TM9SF3Q9HD45 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.82■■□□□ 1.24
TM9SF3Q9HD45 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
TM9SF3Q9HD45 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.82■■□□□ 1.24
TM9SF3Q9HD45 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
TM9SF3Q9HD45 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
TM9SF3Q9HD45 LGR4-203ENST00000480977 492 ntTSL 2 BASIC22.82■■□□□ 1.24
TM9SF3Q9HD45 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
TM9SF3Q9HD45 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
TM9SF3Q9HD45 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC22.82■■□□□ 1.24
TM9SF3Q9HD45 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
TM9SF3Q9HD45 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
TM9SF3Q9HD45 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 GRAMD4P4-201ENST00000613563 1115 ntBASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.81■■□□□ 1.24
TM9SF3Q9HD45 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
TM9SF3Q9HD45 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.8■■□□□ 1.24
TM9SF3Q9HD45 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
TM9SF3Q9HD45 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
TM9SF3Q9HD45 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
TM9SF3Q9HD45 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
TM9SF3Q9HD45 AL136967.2-201ENST00000623968 743 ntBASIC22.8■■□□□ 1.24
TM9SF3Q9HD45 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
TM9SF3Q9HD45 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.8■■□□□ 1.24
TM9SF3Q9HD45 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
TM9SF3Q9HD45 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
TM9SF3Q9HD45 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
TM9SF3Q9HD45 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms