Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
LRFN3Q9BTN0 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LRFN3Q9BTN0 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
LRFN3Q9BTN0 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC23.39■■□□□ 1.33
LRFN3Q9BTN0 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LRFN3Q9BTN0 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC23.39■■□□□ 1.33
LRFN3Q9BTN0 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LRFN3Q9BTN0 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LRFN3Q9BTN0 AC090877.2-201ENST00000558441 1738 ntBASIC23.39■■□□□ 1.33
LRFN3Q9BTN0 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.38■■□□□ 1.33
LRFN3Q9BTN0 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRFN3Q9BTN0 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
LRFN3Q9BTN0 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC23.38■■□□□ 1.33
LRFN3Q9BTN0 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.38■■□□□ 1.33
LRFN3Q9BTN0 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
LRFN3Q9BTN0 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
LRFN3Q9BTN0 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.38■■□□□ 1.33
LRFN3Q9BTN0 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
LRFN3Q9BTN0 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.38■■□□□ 1.33
LRFN3Q9BTN0 AL449106.1-201ENST00000608517 1980 ntBASIC23.38■■□□□ 1.33
LRFN3Q9BTN0 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC23.37■■□□□ 1.33
LRFN3Q9BTN0 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC23.37■■□□□ 1.33
LRFN3Q9BTN0 AC142086.2-201ENST00000569753 217 ntBASIC23.37■■□□□ 1.33
LRFN3Q9BTN0 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC23.37■■□□□ 1.33
LRFN3Q9BTN0 BID-214ENST00000617586 542 ntTSL 5 BASIC23.37■■□□□ 1.33
LRFN3Q9BTN0 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
LRFN3Q9BTN0 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRFN3Q9BTN0 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
LRFN3Q9BTN0 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRFN3Q9BTN0 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
LRFN3Q9BTN0 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC23.36■■□□□ 1.33
LRFN3Q9BTN0 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
LRFN3Q9BTN0 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRFN3Q9BTN0 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
LRFN3Q9BTN0 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRFN3Q9BTN0 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.35■■□□□ 1.33
LRFN3Q9BTN0 AC009102.2-201ENST00000606772 1639 ntBASIC23.35■■□□□ 1.33
LRFN3Q9BTN0 HSCB-202ENST00000398941 955 ntTSL 2 BASIC23.35■■□□□ 1.33
LRFN3Q9BTN0 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
LRFN3Q9BTN0 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRFN3Q9BTN0 FOXO3B-201ENST00000395675 1928 ntBASIC23.35■■□□□ 1.33
LRFN3Q9BTN0 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRFN3Q9BTN0 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRFN3Q9BTN0 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.34■■□□□ 1.33
LRFN3Q9BTN0 AC087239.1-201ENST00000622671 572 ntBASIC23.34■■□□□ 1.33
LRFN3Q9BTN0 GAMT-205ENST00000640762 751 ntTSL 5 BASIC23.34■■□□□ 1.33
LRFN3Q9BTN0 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.34■■□□□ 1.33
LRFN3Q9BTN0 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.34■■□□□ 1.33
LRFN3Q9BTN0 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRFN3Q9BTN0 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC23.34■■□□□ 1.33
LRFN3Q9BTN0 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC23.34■■□□□ 1.33
LRFN3Q9BTN0 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRFN3Q9BTN0 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRFN3Q9BTN0 KRT18P61-201ENST00000585825 1298 ntBASIC23.33■■□□□ 1.33
LRFN3Q9BTN0 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
LRFN3Q9BTN0 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.32
LRFN3Q9BTN0 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
LRFN3Q9BTN0 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
LRFN3Q9BTN0 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.32■■□□□ 1.32
LRFN3Q9BTN0 STX7-201ENST00000367937 1090 ntTSL 5 BASIC23.32■■□□□ 1.32
LRFN3Q9BTN0 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
LRFN3Q9BTN0 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
LRFN3Q9BTN0 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
LRFN3Q9BTN0 IGHV3-19-201ENST00000521488 291 ntBASIC23.32■■□□□ 1.32
LRFN3Q9BTN0 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC23.32■■□□□ 1.32
LRFN3Q9BTN0 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.32■■□□□ 1.32
LRFN3Q9BTN0 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
LRFN3Q9BTN0 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
LRFN3Q9BTN0 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
LRFN3Q9BTN0 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.31■■□□□ 1.32
LRFN3Q9BTN0 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
LRFN3Q9BTN0 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.31■■□□□ 1.32
LRFN3Q9BTN0 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
LRFN3Q9BTN0 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC23.3■■□□□ 1.32
LRFN3Q9BTN0 MIR663A-201ENST00000385250 93 ntBASIC23.3■■□□□ 1.32
LRFN3Q9BTN0 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
LRFN3Q9BTN0 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC23.3■■□□□ 1.32
LRFN3Q9BTN0 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC23.3■■□□□ 1.32
LRFN3Q9BTN0 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.3■■□□□ 1.32
LRFN3Q9BTN0 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 C17orf82-201ENST00000623772 1530 ntBASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 DBI-210ENST00000542275 757 ntTSL 5 BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 KLF13-207ENST00000560473 489 ntTSL 3 BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.29■■□□□ 1.32
LRFN3Q9BTN0 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
LRFN3Q9BTN0 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
LRFN3Q9BTN0 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
LRFN3Q9BTN0 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
LRFN3Q9BTN0 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC23.28■■□□□ 1.32
LRFN3Q9BTN0 AC009086.3-201ENST00000623486 1008 ntBASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms