Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 LINC00543-201ENST00000567234 1845 ntBASIC27■■□□□ 1.91
ZKSCAN3Q9BRR0 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
ZKSCAN3Q9BRR0 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
ZKSCAN3Q9BRR0 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
ZKSCAN3Q9BRR0 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
ZKSCAN3Q9BRR0 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC26.99■■□□□ 1.91
ZKSCAN3Q9BRR0 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
ZKSCAN3Q9BRR0 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
ZKSCAN3Q9BRR0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.99■■□□□ 1.91
ZKSCAN3Q9BRR0 AC004812.2-201ENST00000611079 2094 ntBASIC26.99■■□□□ 1.91
ZKSCAN3Q9BRR0 MIR6722-201ENST00000617286 78 ntBASIC26.98■■□□□ 1.91
ZKSCAN3Q9BRR0 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
ZKSCAN3Q9BRR0 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
ZKSCAN3Q9BRR0 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC26.97■■□□□ 1.91
ZKSCAN3Q9BRR0 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC26.96■■□□□ 1.91
ZKSCAN3Q9BRR0 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC26.96■■□□□ 1.91
ZKSCAN3Q9BRR0 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
ZKSCAN3Q9BRR0 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.91
ZKSCAN3Q9BRR0 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC26.95■■□□□ 1.91
ZKSCAN3Q9BRR0 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
ZKSCAN3Q9BRR0 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
ZKSCAN3Q9BRR0 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
ZKSCAN3Q9BRR0 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC26.95■■□□□ 1.9
ZKSCAN3Q9BRR0 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC26.95■■□□□ 1.9
ZKSCAN3Q9BRR0 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.95■■□□□ 1.9
ZKSCAN3Q9BRR0 MIR6724-1-201ENST00000616420 92 ntBASIC26.95■■□□□ 1.9
ZKSCAN3Q9BRR0 MIR6724-2-201ENST00000616483 92 ntBASIC26.95■■□□□ 1.9
ZKSCAN3Q9BRR0 MIR6724-4-201ENST00000617390 92 ntBASIC26.95■■□□□ 1.9
ZKSCAN3Q9BRR0 MIR6724-3-201ENST00000622482 92 ntBASIC26.95■■□□□ 1.9
ZKSCAN3Q9BRR0 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
ZKSCAN3Q9BRR0 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
ZKSCAN3Q9BRR0 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC26.94■■□□□ 1.9
ZKSCAN3Q9BRR0 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC26.94■■□□□ 1.9
ZKSCAN3Q9BRR0 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
ZKSCAN3Q9BRR0 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
ZKSCAN3Q9BRR0 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC26.94■■□□□ 1.9
ZKSCAN3Q9BRR0 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC26.93■■□□□ 1.9
ZKSCAN3Q9BRR0 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
ZKSCAN3Q9BRR0 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC26.93■■□□□ 1.9
ZKSCAN3Q9BRR0 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC26.93■■□□□ 1.9
ZKSCAN3Q9BRR0 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC26.93■■□□□ 1.9
ZKSCAN3Q9BRR0 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC26.92■■□□□ 1.9
ZKSCAN3Q9BRR0 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
ZKSCAN3Q9BRR0 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
ZKSCAN3Q9BRR0 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC26.92■■□□□ 1.9
ZKSCAN3Q9BRR0 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC26.92■■□□□ 1.9
ZKSCAN3Q9BRR0 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
ZKSCAN3Q9BRR0 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC26.92■■□□□ 1.9
ZKSCAN3Q9BRR0 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
ZKSCAN3Q9BRR0 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
ZKSCAN3Q9BRR0 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC26.92■■□□□ 1.9
ZKSCAN3Q9BRR0 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC26.92■■□□□ 1.9
ZKSCAN3Q9BRR0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
ZKSCAN3Q9BRR0 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC26.91■■□□□ 1.9
ZKSCAN3Q9BRR0 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
ZKSCAN3Q9BRR0 REST-206ENST00000612429 1376 ntTSL 5 BASIC26.91■■□□□ 1.9
ZKSCAN3Q9BRR0 REST-207ENST00000616975 1370 ntTSL 5 BASIC26.91■■□□□ 1.9
ZKSCAN3Q9BRR0 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
ZKSCAN3Q9BRR0 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
ZKSCAN3Q9BRR0 ABCB10P4-201ENST00000566803 2184 ntBASIC26.91■■□□□ 1.9
ZKSCAN3Q9BRR0 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.9■■□□□ 1.9
ZKSCAN3Q9BRR0 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
ZKSCAN3Q9BRR0 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
ZKSCAN3Q9BRR0 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC26.9■■□□□ 1.9
ZKSCAN3Q9BRR0 TFPT-201ENST00000391757 774 ntTSL 5 BASIC26.9■■□□□ 1.9
ZKSCAN3Q9BRR0 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
ZKSCAN3Q9BRR0 AL117332.1-201ENST00000622628 974 ntBASIC26.9■■□□□ 1.9
ZKSCAN3Q9BRR0 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
ZKSCAN3Q9BRR0 SHD-204ENST00000599689 1729 ntTSL 5 BASIC26.9■■□□□ 1.9
ZKSCAN3Q9BRR0 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC26.9■■□□□ 1.9
ZKSCAN3Q9BRR0 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC26.89■■□□□ 1.9
ZKSCAN3Q9BRR0 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC26.89■■□□□ 1.9
ZKSCAN3Q9BRR0 AL161729.1-201ENST00000604104 1402 ntBASIC26.89■■□□□ 1.89
ZKSCAN3Q9BRR0 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
ZKSCAN3Q9BRR0 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.89
ZKSCAN3Q9BRR0 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.89
ZKSCAN3Q9BRR0 AC141586.4-201ENST00000624558 1573 ntBASIC26.88■■□□□ 1.89
ZKSCAN3Q9BRR0 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
ZKSCAN3Q9BRR0 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC26.88■■□□□ 1.89
ZKSCAN3Q9BRR0 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
ZKSCAN3Q9BRR0 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
ZKSCAN3Q9BRR0 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
ZKSCAN3Q9BRR0 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC26.88■■□□□ 1.89
ZKSCAN3Q9BRR0 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 EI24-204ENST00000527235 1625 ntTSL 5 BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 ALDH1A3-203ENST00000557963 1670 ntBASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
ZKSCAN3Q9BRR0 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
ZKSCAN3Q9BRR0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms