Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SNED1Q8TER0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC28.25■■■□□ 2.11
SNED1Q8TER0 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC28.25■■■□□ 2.11
SNED1Q8TER0 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
SNED1Q8TER0 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
SNED1Q8TER0 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SNED1Q8TER0 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SNED1Q8TER0 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
SNED1Q8TER0 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
SNED1Q8TER0 SNX3-202ENST00000349379 890 ntTSL 2 BASIC28.24■■■□□ 2.11
SNED1Q8TER0 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC28.24■■■□□ 2.11
SNED1Q8TER0 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
SNED1Q8TER0 RARRES2P11-201ENST00000635158 484 ntBASIC28.24■■■□□ 2.11
SNED1Q8TER0 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC28.24■■■□□ 2.11
SNED1Q8TER0 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
SNED1Q8TER0 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
SNED1Q8TER0 HES6-206ENST00000409574 738 ntTSL 2 BASIC28.23■■■□□ 2.11
SNED1Q8TER0 AC090192.1-201ENST00000517740 490 ntBASIC28.23■■■□□ 2.11
SNED1Q8TER0 IKBKGP1-201ENST00000612193 1073 ntBASIC28.23■■■□□ 2.11
SNED1Q8TER0 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC28.23■■■□□ 2.11
SNED1Q8TER0 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC28.23■■■□□ 2.11
SNED1Q8TER0 MPST-208ENST00000628507 698 ntTSL 5 BASIC28.23■■■□□ 2.11
SNED1Q8TER0 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
SNED1Q8TER0 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC28.22■■■□□ 2.11
SNED1Q8TER0 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SNED1Q8TER0 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SNED1Q8TER0 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SNED1Q8TER0 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC28.22■■■□□ 2.11
SNED1Q8TER0 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC28.22■■■□□ 2.11
SNED1Q8TER0 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
SNED1Q8TER0 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SNED1Q8TER0 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC28.22■■■□□ 2.11
SNED1Q8TER0 AC092437.1-201ENST00000624794 1048 ntBASIC28.22■■■□□ 2.11
SNED1Q8TER0 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SNED1Q8TER0 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
SNED1Q8TER0 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
SNED1Q8TER0 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SNED1Q8TER0 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC28.21■■■□□ 2.11
SNED1Q8TER0 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC28.21■■■□□ 2.11
SNED1Q8TER0 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SNED1Q8TER0 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC28.21■■■□□ 2.11
SNED1Q8TER0 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SNED1Q8TER0 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
SNED1Q8TER0 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
SNED1Q8TER0 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
SNED1Q8TER0 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC28.2■■■□□ 2.11
SNED1Q8TER0 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC28.2■■■□□ 2.11
SNED1Q8TER0 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
SNED1Q8TER0 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
SNED1Q8TER0 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
SNED1Q8TER0 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC28.2■■■□□ 2.1
SNED1Q8TER0 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
SNED1Q8TER0 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
SNED1Q8TER0 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
SNED1Q8TER0 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
SNED1Q8TER0 BX842568.3-201ENST00000418104 571 ntBASIC28.19■■■□□ 2.1
SNED1Q8TER0 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
SNED1Q8TER0 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SNED1Q8TER0 KRT18P5-201ENST00000436075 1291 ntBASIC28.18■■■□□ 2.1
SNED1Q8TER0 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC28.18■■■□□ 2.1
SNED1Q8TER0 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SNED1Q8TER0 MIR6089-201ENST00000616698 64 ntBASIC28.18■■■□□ 2.1
SNED1Q8TER0 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SNED1Q8TER0 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
SNED1Q8TER0 AC233992.3-201ENST00000607491 485 ntBASIC28.18■■■□□ 2.1
SNED1Q8TER0 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC28.17■■■□□ 2.1
SNED1Q8TER0 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SNED1Q8TER0 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC28.17■■■□□ 2.1
SNED1Q8TER0 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SNED1Q8TER0 ASB1-202ENST00000409297 878 ntTSL 5 BASIC28.17■■■□□ 2.1
SNED1Q8TER0 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC28.17■■■□□ 2.1
SNED1Q8TER0 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SNED1Q8TER0 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC28.17■■■□□ 2.1
SNED1Q8TER0 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SNED1Q8TER0 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SNED1Q8TER0 AK1-201ENST00000223836 736 ntTSL 3 BASIC28.16■■■□□ 2.1
SNED1Q8TER0 STK32C-205ENST00000456004 607 ntTSL 2 BASIC28.16■■■□□ 2.1
SNED1Q8TER0 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC28.16■■■□□ 2.1
SNED1Q8TER0 AC241377.3-202ENST00000626088 1088 ntBASIC28.16■■■□□ 2.1
SNED1Q8TER0 AC241585.3-202ENST00000628937 1088 ntBASIC28.16■■■□□ 2.1
SNED1Q8TER0 AC245100.8-202ENST00000629247 1058 ntBASIC28.16■■■□□ 2.1
SNED1Q8TER0 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SNED1Q8TER0 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC28.15■■■□□ 2.1
SNED1Q8TER0 AC034268.1-201ENST00000441047 882 ntBASIC28.15■■■□□ 2.1
SNED1Q8TER0 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC28.15■■■□□ 2.1
SNED1Q8TER0 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC28.15■■■□□ 2.1
SNED1Q8TER0 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.1
SNED1Q8TER0 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SNED1Q8TER0 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
SNED1Q8TER0 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
SNED1Q8TER0 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC28.14■■■□□ 2.1
SNED1Q8TER0 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SNED1Q8TER0 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC28.14■■■□□ 2.1
SNED1Q8TER0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC28.14■■■□□ 2.1
SNED1Q8TER0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
SNED1Q8TER0 DUX4L2-201ENST00000561772 1275 ntBASIC28.14■■■□□ 2.1
SNED1Q8TER0 MIR3181-201ENST00000578512 73 ntBASIC28.14■■■□□ 2.1
SNED1Q8TER0 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC28.14■■■□□ 2.1
SNED1Q8TER0 DUX4L6-201ENST00000626483 1275 ntBASIC28.14■■■□□ 2.1
SNED1Q8TER0 DUX4L1-201ENST00000627662 1275 ntBASIC28.14■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms