Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC22.4■■□□□ 1.18
LMX1AQ8TE12 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LMX1AQ8TE12 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
LMX1AQ8TE12 AC092171.4-201ENST00000609130 632 ntBASIC22.4■■□□□ 1.18
LMX1AQ8TE12 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC22.39■■□□□ 1.18
LMX1AQ8TE12 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.39■■□□□ 1.18
LMX1AQ8TE12 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
LMX1AQ8TE12 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.18
LMX1AQ8TE12 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.39■■□□□ 1.17
LMX1AQ8TE12 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LMX1AQ8TE12 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LMX1AQ8TE12 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LMX1AQ8TE12 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.39■■□□□ 1.17
LMX1AQ8TE12 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LMX1AQ8TE12 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LMX1AQ8TE12 AC009102.2-201ENST00000606772 1639 ntBASIC22.39■■□□□ 1.17
LMX1AQ8TE12 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
LMX1AQ8TE12 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.38■■□□□ 1.17
LMX1AQ8TE12 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LMX1AQ8TE12 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
LMX1AQ8TE12 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
LMX1AQ8TE12 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC22.38■■□□□ 1.17
LMX1AQ8TE12 AC099791.2-201ENST00000605725 427 ntBASIC22.38■■□□□ 1.17
LMX1AQ8TE12 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
LMX1AQ8TE12 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LMX1AQ8TE12 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.38■■□□□ 1.17
LMX1AQ8TE12 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC22.37■■□□□ 1.17
LMX1AQ8TE12 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
LMX1AQ8TE12 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
LMX1AQ8TE12 GRAMD4P4-201ENST00000613563 1115 ntBASIC22.37■■□□□ 1.17
LMX1AQ8TE12 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.37■■□□□ 1.17
LMX1AQ8TE12 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
LMX1AQ8TE12 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
LMX1AQ8TE12 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
LMX1AQ8TE12 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
LMX1AQ8TE12 HLA-L-211ENST00000482052 1765 ntBASIC22.36■■□□□ 1.17
LMX1AQ8TE12 HYI-206ENST00000372434 1025 ntTSL 5 BASIC22.36■■□□□ 1.17
LMX1AQ8TE12 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LMX1AQ8TE12 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
LMX1AQ8TE12 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.36■■□□□ 1.17
LMX1AQ8TE12 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
LMX1AQ8TE12 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.36■■□□□ 1.17
LMX1AQ8TE12 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
LMX1AQ8TE12 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.35■■□□□ 1.17
LMX1AQ8TE12 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.35■■□□□ 1.17
LMX1AQ8TE12 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
LMX1AQ8TE12 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.35■■□□□ 1.17
LMX1AQ8TE12 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
LMX1AQ8TE12 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
LMX1AQ8TE12 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
LMX1AQ8TE12 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.35■■□□□ 1.17
LMX1AQ8TE12 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC22.35■■□□□ 1.17
LMX1AQ8TE12 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.34■■□□□ 1.17
LMX1AQ8TE12 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LMX1AQ8TE12 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
LMX1AQ8TE12 SERBP1P1-201ENST00000396021 1160 ntBASIC22.34■■□□□ 1.17
LMX1AQ8TE12 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
LMX1AQ8TE12 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC22.34■■□□□ 1.17
LMX1AQ8TE12 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC22.34■■□□□ 1.17
LMX1AQ8TE12 AF213884.3-201ENST00000563833 479 ntBASIC22.34■■□□□ 1.17
LMX1AQ8TE12 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.34■■□□□ 1.17
LMX1AQ8TE12 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
LMX1AQ8TE12 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
LMX1AQ8TE12 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
LMX1AQ8TE12 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
LMX1AQ8TE12 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
LMX1AQ8TE12 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC22.33■■□□□ 1.17
LMX1AQ8TE12 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.33■■□□□ 1.17
LMX1AQ8TE12 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22.33■■□□□ 1.17
LMX1AQ8TE12 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
LMX1AQ8TE12 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
LMX1AQ8TE12 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
LMX1AQ8TE12 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
LMX1AQ8TE12 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.32■■□□□ 1.16
LMX1AQ8TE12 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 MIR4767-201ENST00000582827 78 ntBASIC22.32■■□□□ 1.16
LMX1AQ8TE12 AL136967.2-201ENST00000623968 743 ntBASIC22.32■■□□□ 1.16
LMX1AQ8TE12 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
LMX1AQ8TE12 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
LMX1AQ8TE12 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LMX1AQ8TE12 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.31■■□□□ 1.16
LMX1AQ8TE12 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
LMX1AQ8TE12 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LMX1AQ8TE12 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms