Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.38
SLC44A3Q8N4M1 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SLC44A3Q8N4M1 BX842568.3-201ENST00000418104 571 ntBASIC23.64■■□□□ 1.37
SLC44A3Q8N4M1 AC034268.1-201ENST00000441047 882 ntBASIC23.64■■□□□ 1.37
SLC44A3Q8N4M1 AC022517.1-201ENST00000592429 346 ntBASIC23.64■■□□□ 1.37
SLC44A3Q8N4M1 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC23.64■■□□□ 1.37
SLC44A3Q8N4M1 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SLC44A3Q8N4M1 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
SLC44A3Q8N4M1 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SLC44A3Q8N4M1 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.63■■□□□ 1.37
SLC44A3Q8N4M1 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.63■■□□□ 1.37
SLC44A3Q8N4M1 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.63■■□□□ 1.37
SLC44A3Q8N4M1 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.63■■□□□ 1.37
SLC44A3Q8N4M1 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC23.63■■□□□ 1.37
SLC44A3Q8N4M1 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SLC44A3Q8N4M1 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SLC44A3Q8N4M1 IKBKGP1-201ENST00000612193 1073 ntBASIC23.63■■□□□ 1.37
SLC44A3Q8N4M1 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SLC44A3Q8N4M1 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.63■■□□□ 1.37
SLC44A3Q8N4M1 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SLC44A3Q8N4M1 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SLC44A3Q8N4M1 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SLC44A3Q8N4M1 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.62■■□□□ 1.37
SLC44A3Q8N4M1 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.62■■□□□ 1.37
SLC44A3Q8N4M1 GRAMD4P2-201ENST00000423297 1097 ntBASIC23.62■■□□□ 1.37
SLC44A3Q8N4M1 AC006455.2-201ENST00000429931 906 ntBASIC23.62■■□□□ 1.37
SLC44A3Q8N4M1 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC23.62■■□□□ 1.37
SLC44A3Q8N4M1 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SLC44A3Q8N4M1 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SLC44A3Q8N4M1 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
SLC44A3Q8N4M1 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
SLC44A3Q8N4M1 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
SLC44A3Q8N4M1 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
SLC44A3Q8N4M1 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SLC44A3Q8N4M1 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC23.61■■□□□ 1.37
SLC44A3Q8N4M1 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.61■■□□□ 1.37
SLC44A3Q8N4M1 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.61■■□□□ 1.37
SLC44A3Q8N4M1 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
SLC44A3Q8N4M1 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.61■■□□□ 1.37
SLC44A3Q8N4M1 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SLC44A3Q8N4M1 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
SLC44A3Q8N4M1 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
SLC44A3Q8N4M1 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC23.6■■□□□ 1.37
SLC44A3Q8N4M1 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.6■■□□□ 1.37
SLC44A3Q8N4M1 MIR3181-201ENST00000578512 73 ntBASIC23.6■■□□□ 1.37
SLC44A3Q8N4M1 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.6■■□□□ 1.37
SLC44A3Q8N4M1 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
SLC44A3Q8N4M1 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.6■■□□□ 1.37
SLC44A3Q8N4M1 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SLC44A3Q8N4M1 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SLC44A3Q8N4M1 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.59■■□□□ 1.37
SLC44A3Q8N4M1 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.59■■□□□ 1.37
SLC44A3Q8N4M1 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC23.59■■□□□ 1.37
SLC44A3Q8N4M1 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.59■■□□□ 1.37
SLC44A3Q8N4M1 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.59■■□□□ 1.37
SLC44A3Q8N4M1 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SLC44A3Q8N4M1 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
SLC44A3Q8N4M1 HACD1-201ENST00000326961 773 ntTSL 2 BASIC23.58■■□□□ 1.37
SLC44A3Q8N4M1 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
SLC44A3Q8N4M1 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
SLC44A3Q8N4M1 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SLC44A3Q8N4M1 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 KRT18P5-201ENST00000436075 1291 ntBASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 AL137784.2-201ENST00000607332 1000 ntBASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC23.57■■□□□ 1.36
SLC44A3Q8N4M1 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 AC009086.3-201ENST00000623486 1008 ntBASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.56■■□□□ 1.36
SLC44A3Q8N4M1 AL022069.1-201ENST00000568025 1636 ntBASIC23.55■■□□□ 1.36
SLC44A3Q8N4M1 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
SLC44A3Q8N4M1 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
SLC44A3Q8N4M1 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.55■■□□□ 1.36
SLC44A3Q8N4M1 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC23.55■■□□□ 1.36
SLC44A3Q8N4M1 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SLC44A3Q8N4M1 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC23.54■■□□□ 1.36
SLC44A3Q8N4M1 SNX3-202ENST00000349379 890 ntTSL 2 BASIC23.54■■□□□ 1.36
SLC44A3Q8N4M1 YBX1P1-201ENST00000445822 960 ntBASIC23.54■■□□□ 1.36
SLC44A3Q8N4M1 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SLC44A3Q8N4M1 AL031602.1-201ENST00000633169 911 ntBASIC23.54■■□□□ 1.36
SLC44A3Q8N4M1 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms