Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC24.46■■□□□ 1.51
DDX53Q86TM3 MIR5787-201ENST00000611784 55 ntBASIC24.46■■□□□ 1.51
DDX53Q86TM3 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
DDX53Q86TM3 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
DDX53Q86TM3 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
DDX53Q86TM3 PTCHD3P2-201ENST00000424937 1205 ntBASIC24.45■■□□□ 1.5
DDX53Q86TM3 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC24.45■■□□□ 1.5
DDX53Q86TM3 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
DDX53Q86TM3 AC092666.2-201ENST00000613287 246 ntBASIC24.45■■□□□ 1.5
DDX53Q86TM3 AC011298.3-201ENST00000615796 283 ntBASIC24.45■■□□□ 1.5
DDX53Q86TM3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.45■■□□□ 1.5
DDX53Q86TM3 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
DDX53Q86TM3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
DDX53Q86TM3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX53Q86TM3 RASA4CP-201ENST00000424092 1398 ntBASIC24.44■■□□□ 1.5
DDX53Q86TM3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX53Q86TM3 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX53Q86TM3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC24.44■■□□□ 1.5
DDX53Q86TM3 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC24.44■■□□□ 1.5
DDX53Q86TM3 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC24.44■■□□□ 1.5
DDX53Q86TM3 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
DDX53Q86TM3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.43■■□□□ 1.5
DDX53Q86TM3 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
DDX53Q86TM3 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
DDX53Q86TM3 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC24.43■■□□□ 1.5
DDX53Q86TM3 MAG-206ENST00000597035 542 ntTSL 4 BASIC24.43■■□□□ 1.5
DDX53Q86TM3 CA15P2-201ENST00000611168 834 ntBASIC24.43■■□□□ 1.5
DDX53Q86TM3 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC24.43■■□□□ 1.5
DDX53Q86TM3 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
DDX53Q86TM3 C17orf82-201ENST00000623772 1530 ntBASIC24.42■■□□□ 1.5
DDX53Q86TM3 CEBPA-AS1-201ENST00000592982 2198 ntBASIC24.42■■□□□ 1.5
DDX53Q86TM3 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
DDX53Q86TM3 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC24.42■■□□□ 1.5
DDX53Q86TM3 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC24.42■■□□□ 1.5
DDX53Q86TM3 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
DDX53Q86TM3 AC027682.1-201ENST00000562846 899 ntBASIC24.41■■□□□ 1.5
DDX53Q86TM3 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
DDX53Q86TM3 AC241377.3-202ENST00000626088 1088 ntBASIC24.41■■□□□ 1.5
DDX53Q86TM3 AC241585.3-202ENST00000628937 1088 ntBASIC24.41■■□□□ 1.5
DDX53Q86TM3 AC245100.8-202ENST00000629247 1058 ntBASIC24.41■■□□□ 1.5
DDX53Q86TM3 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC24.41■■□□□ 1.5
DDX53Q86TM3 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
DDX53Q86TM3 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
DDX53Q86TM3 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC24.4■■□□□ 1.5
DDX53Q86TM3 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC24.4■■□□□ 1.5
DDX53Q86TM3 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC24.4■■□□□ 1.5
DDX53Q86TM3 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
DDX53Q86TM3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
DDX53Q86TM3 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
DDX53Q86TM3 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
DDX53Q86TM3 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
DDX53Q86TM3 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
DDX53Q86TM3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
DDX53Q86TM3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
DDX53Q86TM3 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
DDX53Q86TM3 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
DDX53Q86TM3 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
DDX53Q86TM3 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC24.38■■□□□ 1.49
DDX53Q86TM3 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
DDX53Q86TM3 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
DDX53Q86TM3 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
DDX53Q86TM3 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
DDX53Q86TM3 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC24.37■■□□□ 1.49
DDX53Q86TM3 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
DDX53Q86TM3 HES6-206ENST00000409574 738 ntTSL 2 BASIC24.37■■□□□ 1.49
DDX53Q86TM3 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC24.37■■□□□ 1.49
DDX53Q86TM3 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC24.37■■□□□ 1.49
DDX53Q86TM3 AC104564.3-201ENST00000582367 638 ntBASIC24.37■■□□□ 1.49
DDX53Q86TM3 MIR6821-201ENST00000617625 74 ntBASIC24.37■■□□□ 1.49
DDX53Q86TM3 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
DDX53Q86TM3 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
DDX53Q86TM3 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
DDX53Q86TM3 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
DDX53Q86TM3 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
DDX53Q86TM3 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
DDX53Q86TM3 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
DDX53Q86TM3 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
DDX53Q86TM3 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC24.36■■□□□ 1.49
DDX53Q86TM3 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DDX53Q86TM3 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DDX53Q86TM3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DDX53Q86TM3 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
DDX53Q86TM3 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DDX53Q86TM3 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
DDX53Q86TM3 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC24.36■■□□□ 1.49
DDX53Q86TM3 AC008764.7-201ENST00000593779 1081 ntBASIC24.36■■□□□ 1.49
DDX53Q86TM3 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.36■■□□□ 1.49
DDX53Q86TM3 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
DDX53Q86TM3 AC145676.1-201ENST00000514988 2004 ntBASIC24.35■■□□□ 1.49
DDX53Q86TM3 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
DDX53Q86TM3 AC091060.1-201ENST00000623524 1766 ntBASIC24.35■■□□□ 1.49
DDX53Q86TM3 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
DDX53Q86TM3 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC24.35■■□□□ 1.49
DDX53Q86TM3 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC24.35■■□□□ 1.49
DDX53Q86TM3 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
DDX53Q86TM3 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
DDX53Q86TM3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
DDX53Q86TM3 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX53Q86TM3 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC24.34■■□□□ 1.49
DDX53Q86TM3 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 183.2 ms