Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC24.75■■□□□ 1.55
KRT39Q6A163 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC24.75■■□□□ 1.55
KRT39Q6A163 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC24.75■■□□□ 1.55
KRT39Q6A163 SNX5-217ENST00000606557 1087 ntBASIC24.75■■□□□ 1.55
KRT39Q6A163 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC24.75■■□□□ 1.55
KRT39Q6A163 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.75■■□□□ 1.55
KRT39Q6A163 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
KRT39Q6A163 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
KRT39Q6A163 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
KRT39Q6A163 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
KRT39Q6A163 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
KRT39Q6A163 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
KRT39Q6A163 ALDH1A3-203ENST00000557963 1670 ntBASIC24.74■■□□□ 1.55
KRT39Q6A163 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
KRT39Q6A163 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
KRT39Q6A163 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC24.74■■□□□ 1.55
KRT39Q6A163 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
KRT39Q6A163 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC24.73■■□□□ 1.55
KRT39Q6A163 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC24.73■■□□□ 1.55
KRT39Q6A163 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
KRT39Q6A163 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
KRT39Q6A163 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC24.73■■□□□ 1.55
KRT39Q6A163 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
KRT39Q6A163 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
KRT39Q6A163 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
KRT39Q6A163 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
KRT39Q6A163 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC24.72■■□□□ 1.55
KRT39Q6A163 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
KRT39Q6A163 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.72■■□□□ 1.55
KRT39Q6A163 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC24.72■■□□□ 1.55
KRT39Q6A163 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC24.72■■□□□ 1.55
KRT39Q6A163 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
KRT39Q6A163 EI24-204ENST00000527235 1625 ntTSL 5 BASIC24.72■■□□□ 1.55
KRT39Q6A163 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC24.71■■□□□ 1.55
KRT39Q6A163 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
KRT39Q6A163 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
KRT39Q6A163 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
KRT39Q6A163 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
KRT39Q6A163 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC24.71■■□□□ 1.55
KRT39Q6A163 KRT125P-201ENST00000546827 989 ntBASIC24.71■■□□□ 1.55
KRT39Q6A163 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC24.71■■□□□ 1.55
KRT39Q6A163 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC24.71■■□□□ 1.55
KRT39Q6A163 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
KRT39Q6A163 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
KRT39Q6A163 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
KRT39Q6A163 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC24.7■■□□□ 1.54
KRT39Q6A163 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC24.7■■□□□ 1.54
KRT39Q6A163 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC24.7■■□□□ 1.54
KRT39Q6A163 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC24.7■■□□□ 1.54
KRT39Q6A163 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KRT39Q6A163 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KRT39Q6A163 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
KRT39Q6A163 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
KRT39Q6A163 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
KRT39Q6A163 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC24.69■■□□□ 1.54
KRT39Q6A163 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.69■■□□□ 1.54
KRT39Q6A163 AC239859.2-201ENST00000444165 318 ntBASIC24.69■■□□□ 1.54
KRT39Q6A163 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
KRT39Q6A163 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
KRT39Q6A163 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
KRT39Q6A163 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC24.69■■□□□ 1.54
KRT39Q6A163 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
KRT39Q6A163 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24.69■■□□□ 1.54
KRT39Q6A163 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC24.68■■□□□ 1.54
KRT39Q6A163 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.68■■□□□ 1.54
KRT39Q6A163 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
KRT39Q6A163 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC24.68■■□□□ 1.54
KRT39Q6A163 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
KRT39Q6A163 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC24.68■■□□□ 1.54
KRT39Q6A163 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC24.68■■□□□ 1.54
KRT39Q6A163 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.68■■□□□ 1.54
KRT39Q6A163 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC24.68■■□□□ 1.54
KRT39Q6A163 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
KRT39Q6A163 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
KRT39Q6A163 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC24.68■■□□□ 1.54
KRT39Q6A163 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
KRT39Q6A163 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC24.67■■□□□ 1.54
KRT39Q6A163 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KRT39Q6A163 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KRT39Q6A163 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC24.67■■□□□ 1.54
KRT39Q6A163 CLTA-210ENST00000540080 989 ntTSL 2 BASIC24.67■■□□□ 1.54
KRT39Q6A163 MIR4787-201ENST00000607364 84 ntBASIC24.67■■□□□ 1.54
KRT39Q6A163 AC092028.1-203ENST00000608262 953 ntBASIC24.67■■□□□ 1.54
KRT39Q6A163 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KRT39Q6A163 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KRT39Q6A163 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
KRT39Q6A163 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC24.67■■□□□ 1.54
KRT39Q6A163 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KRT39Q6A163 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC24.67■■□□□ 1.54
KRT39Q6A163 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
KRT39Q6A163 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
KRT39Q6A163 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC24.66■■□□□ 1.54
KRT39Q6A163 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
KRT39Q6A163 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
KRT39Q6A163 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC24.66■■□□□ 1.54
KRT39Q6A163 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
KRT39Q6A163 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC24.65■■□□□ 1.54
KRT39Q6A163 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
KRT39Q6A163 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
KRT39Q6A163 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms