Protein–RNA interactions for Protein: Q5ST30

VARS2, Valine--tRNA ligase, mitochondrial, humanhuman

Known RBP Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2Q5ST30 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
VARS2Q5ST30 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC24.38■■□□□ 1.49
VARS2Q5ST30 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
VARS2Q5ST30 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
VARS2Q5ST30 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
VARS2Q5ST30 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
VARS2Q5ST30 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
VARS2Q5ST30 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC24.38■■□□□ 1.49
VARS2Q5ST30 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
VARS2Q5ST30 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
VARS2Q5ST30 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
VARS2Q5ST30 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
VARS2Q5ST30 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
VARS2Q5ST30 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC24.37■■□□□ 1.49
VARS2Q5ST30 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
VARS2Q5ST30 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC24.37■■□□□ 1.49
VARS2Q5ST30 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
VARS2Q5ST30 AL136162.1-201ENST00000607711 1078 ntBASIC24.37■■□□□ 1.49
VARS2Q5ST30 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC24.37■■□□□ 1.49
VARS2Q5ST30 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
VARS2Q5ST30 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
VARS2Q5ST30 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
VARS2Q5ST30 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC24.36■■□□□ 1.49
VARS2Q5ST30 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
VARS2Q5ST30 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
VARS2Q5ST30 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC24.36■■□□□ 1.49
VARS2Q5ST30 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC24.36■■□□□ 1.49
VARS2Q5ST30 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
VARS2Q5ST30 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
VARS2Q5ST30 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC24.36■■□□□ 1.49
VARS2Q5ST30 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
VARS2Q5ST30 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
VARS2Q5ST30 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
VARS2Q5ST30 AL161729.1-201ENST00000604104 1402 ntBASIC24.35■■□□□ 1.49
VARS2Q5ST30 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC24.34■■□□□ 1.49
VARS2Q5ST30 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.34■■□□□ 1.49
VARS2Q5ST30 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
VARS2Q5ST30 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.34■■□□□ 1.49
VARS2Q5ST30 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
VARS2Q5ST30 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC24.34■■□□□ 1.49
VARS2Q5ST30 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
VARS2Q5ST30 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
VARS2Q5ST30 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC24.34■■□□□ 1.49
VARS2Q5ST30 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
VARS2Q5ST30 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.34■■□□□ 1.49
VARS2Q5ST30 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
VARS2Q5ST30 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
VARS2Q5ST30 AC135279.3-201ENST00000610945 1311 ntBASIC24.34■■□□□ 1.49
VARS2Q5ST30 AC009102.2-201ENST00000606772 1639 ntBASIC24.33■■□□□ 1.49
VARS2Q5ST30 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
VARS2Q5ST30 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
VARS2Q5ST30 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
VARS2Q5ST30 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC24.33■■□□□ 1.49
VARS2Q5ST30 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC24.33■■□□□ 1.49
VARS2Q5ST30 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
VARS2Q5ST30 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
VARS2Q5ST30 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
VARS2Q5ST30 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC24.32■■□□□ 1.48
VARS2Q5ST30 AC024257.2-201ENST00000549699 147 ntBASIC24.32■■□□□ 1.48
VARS2Q5ST30 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
VARS2Q5ST30 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
VARS2Q5ST30 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
VARS2Q5ST30 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
VARS2Q5ST30 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
VARS2Q5ST30 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
VARS2Q5ST30 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
VARS2Q5ST30 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC24.31■■□□□ 1.48
VARS2Q5ST30 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
VARS2Q5ST30 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
VARS2Q5ST30 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
VARS2Q5ST30 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
VARS2Q5ST30 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
VARS2Q5ST30 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC24.3■■□□□ 1.48
VARS2Q5ST30 AP003733.4-201ENST00000623785 1697 ntBASIC24.3■■□□□ 1.48
VARS2Q5ST30 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
VARS2Q5ST30 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
VARS2Q5ST30 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
VARS2Q5ST30 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
VARS2Q5ST30 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
VARS2Q5ST30 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
VARS2Q5ST30 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VARS2Q5ST30 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VARS2Q5ST30 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
VARS2Q5ST30 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC24.29■■□□□ 1.48
VARS2Q5ST30 DUX4L19-201ENST00000557448 1267 ntBASIC24.29■■□□□ 1.48
VARS2Q5ST30 AL031432.3-201ENST00000607698 485 ntBASIC24.29■■□□□ 1.48
VARS2Q5ST30 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC24.29■■□□□ 1.48
VARS2Q5ST30 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC24.29■■□□□ 1.48
VARS2Q5ST30 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
VARS2Q5ST30 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC24.28■■□□□ 1.48
VARS2Q5ST30 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VARS2Q5ST30 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VARS2Q5ST30 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC24.28■■□□□ 1.48
VARS2Q5ST30 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
VARS2Q5ST30 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC24.28■■□□□ 1.48
VARS2Q5ST30 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
VARS2Q5ST30 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VARS2Q5ST30 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC24.28■■□□□ 1.48
VARS2Q5ST30 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
VARS2Q5ST30 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms