Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 AC092068.2-201ENST00000590491 1708 ntBASIC21.22■□□□□ 0.99
RFX4Q33E94 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX4Q33E94 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.22■□□□□ 0.99
RFX4Q33E94 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX4Q33E94 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX4Q33E94 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX4Q33E94 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RFX4Q33E94 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
RFX4Q33E94 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
RFX4Q33E94 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
RFX4Q33E94 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
RFX4Q33E94 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RFX4Q33E94 LINC00526-201ENST00000581067 1875 ntBASIC21.21■□□□□ 0.99
RFX4Q33E94 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RFX4Q33E94 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RFX4Q33E94 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.21■□□□□ 0.99
RFX4Q33E94 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RFX4Q33E94 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RFX4Q33E94 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
RFX4Q33E94 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
RFX4Q33E94 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX4Q33E94 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX4Q33E94 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
RFX4Q33E94 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX4Q33E94 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.2■□□□□ 0.98
RFX4Q33E94 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RFX4Q33E94 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX4Q33E94 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX4Q33E94 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX4Q33E94 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX4Q33E94 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX4Q33E94 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX4Q33E94 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX4Q33E94 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.19■□□□□ 0.98
RFX4Q33E94 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
RFX4Q33E94 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.19■□□□□ 0.98
RFX4Q33E94 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.19■□□□□ 0.98
RFX4Q33E94 RAP2CP1-202ENST00000605179 643 ntBASIC21.19■□□□□ 0.98
RFX4Q33E94 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.19■□□□□ 0.98
RFX4Q33E94 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RFX4Q33E94 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
RFX4Q33E94 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RFX4Q33E94 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RFX4Q33E94 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
RFX4Q33E94 KRT18P10-201ENST00000388836 1287 ntBASIC21.18■□□□□ 0.98
RFX4Q33E94 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RFX4Q33E94 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.18■□□□□ 0.98
RFX4Q33E94 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RFX4Q33E94 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
RFX4Q33E94 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RFX4Q33E94 AC137767.1-201ENST00000602918 1920 ntBASIC21.17■□□□□ 0.98
RFX4Q33E94 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RFX4Q33E94 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
RFX4Q33E94 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.17■□□□□ 0.98
RFX4Q33E94 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.17■□□□□ 0.98
RFX4Q33E94 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RFX4Q33E94 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.17■□□□□ 0.98
RFX4Q33E94 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RFX4Q33E94 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RFX4Q33E94 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RFX4Q33E94 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RFX4Q33E94 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RFX4Q33E94 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RFX4Q33E94 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
RFX4Q33E94 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RFX4Q33E94 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RFX4Q33E94 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.16■□□□□ 0.98
RFX4Q33E94 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RFX4Q33E94 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
RFX4Q33E94 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RFX4Q33E94 GUSBP5-202ENST00000510805 1989 ntBASIC21.16■□□□□ 0.98
RFX4Q33E94 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RFX4Q33E94 FOXO3B-201ENST00000395675 1928 ntBASIC21.16■□□□□ 0.98
RFX4Q33E94 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RFX4Q33E94 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RFX4Q33E94 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RFX4Q33E94 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.15■□□□□ 0.98
RFX4Q33E94 AC026202.3-201ENST00000600805 1127 ntBASIC21.15■□□□□ 0.98
RFX4Q33E94 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
RFX4Q33E94 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RFX4Q33E94 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RFX4Q33E94 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RFX4Q33E94 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RFX4Q33E94 ECEL1P1-201ENST00000373592 1742 ntBASIC21.15■□□□□ 0.98
RFX4Q33E94 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RFX4Q33E94 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.15■□□□□ 0.98
RFX4Q33E94 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
RFX4Q33E94 C1orf229-201ENST00000623686 2258 ntBASIC21.15■□□□□ 0.98
RFX4Q33E94 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RFX4Q33E94 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
RFX4Q33E94 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.14■□□□□ 0.98
RFX4Q33E94 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.14■□□□□ 0.97
RFX4Q33E94 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
RFX4Q33E94 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RFX4Q33E94 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RFX4Q33E94 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.14■□□□□ 0.97
RFX4Q33E94 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
RFX4Q33E94 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RFX4Q33E94 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RFX4Q33E94 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms