Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
H3F3AP84243 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.49■□□□□ 0.87
H3F3AP84243 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.49■□□□□ 0.87
H3F3AP84243 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.49■□□□□ 0.87
H3F3AP84243 MIR6722-201ENST00000617286 78 ntBASIC20.49■□□□□ 0.87
H3F3AP84243 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
H3F3AP84243 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
H3F3AP84243 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.49■□□□□ 0.87
H3F3AP84243 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
H3F3AP84243 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
H3F3AP84243 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
H3F3AP84243 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
H3F3AP84243 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
H3F3AP84243 GUSBP5-201ENST00000418136 578 ntBASIC20.48■□□□□ 0.87
H3F3AP84243 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.48■□□□□ 0.87
H3F3AP84243 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
H3F3AP84243 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.48■□□□□ 0.87
H3F3AP84243 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.47■□□□□ 0.87
H3F3AP84243 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
H3F3AP84243 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.47■□□□□ 0.87
H3F3AP84243 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
H3F3AP84243 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
H3F3AP84243 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.47■□□□□ 0.87
H3F3AP84243 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.47■□□□□ 0.87
H3F3AP84243 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
H3F3AP84243 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
H3F3AP84243 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
H3F3AP84243 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
H3F3AP84243 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
H3F3AP84243 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.46■□□□□ 0.87
H3F3AP84243 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
H3F3AP84243 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.46■□□□□ 0.87
H3F3AP84243 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.46■□□□□ 0.87
H3F3AP84243 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
H3F3AP84243 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.45■□□□□ 0.87
H3F3AP84243 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
H3F3AP84243 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
H3F3AP84243 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
H3F3AP84243 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
H3F3AP84243 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
H3F3AP84243 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.45■□□□□ 0.86
H3F3AP84243 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.45■□□□□ 0.86
H3F3AP84243 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.45■□□□□ 0.86
H3F3AP84243 ALDH1A3-203ENST00000557963 1670 ntBASIC20.45■□□□□ 0.86
H3F3AP84243 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
H3F3AP84243 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.44■□□□□ 0.86
H3F3AP84243 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
H3F3AP84243 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
H3F3AP84243 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
H3F3AP84243 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
H3F3AP84243 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
H3F3AP84243 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.44■□□□□ 0.86
H3F3AP84243 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
H3F3AP84243 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
H3F3AP84243 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
H3F3AP84243 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
H3F3AP84243 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
H3F3AP84243 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
H3F3AP84243 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
H3F3AP84243 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
H3F3AP84243 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
H3F3AP84243 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
H3F3AP84243 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
H3F3AP84243 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
H3F3AP84243 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
H3F3AP84243 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
H3F3AP84243 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.42■□□□□ 0.86
H3F3AP84243 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
H3F3AP84243 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.42■□□□□ 0.86
H3F3AP84243 UNC93B8-201ENST00000511903 705 ntBASIC20.42■□□□□ 0.86
H3F3AP84243 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
H3F3AP84243 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
H3F3AP84243 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
H3F3AP84243 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
H3F3AP84243 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
H3F3AP84243 ABCB10P4-201ENST00000566803 2184 ntBASIC20.42■□□□□ 0.86
H3F3AP84243 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
H3F3AP84243 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
H3F3AP84243 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
H3F3AP84243 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
H3F3AP84243 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
H3F3AP84243 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
H3F3AP84243 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
H3F3AP84243 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
H3F3AP84243 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
H3F3AP84243 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
H3F3AP84243 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.41■□□□□ 0.86
H3F3AP84243 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.41■□□□□ 0.86
H3F3AP84243 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.41■□□□□ 0.86
H3F3AP84243 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
H3F3AP84243 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
H3F3AP84243 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.41■□□□□ 0.86
H3F3AP84243 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
H3F3AP84243 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
H3F3AP84243 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
H3F3AP84243 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
H3F3AP84243 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.41■□□□□ 0.86
H3F3AP84243 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
H3F3AP84243 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
H3F3AP84243 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms