Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC026185.1-201ENST00000445748 174 ntBASIC16.94■□□□□ 0.3
PRKDCP78527 AC142086.2-201ENST00000569753 217 ntBASIC16.94■□□□□ 0.3
PRKDCP78527 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC16.94■□□□□ 0.3
PRKDCP78527 REST-206ENST00000612429 1376 ntTSL 5 BASIC16.94■□□□□ 0.3
PRKDCP78527 REST-207ENST00000616975 1370 ntTSL 5 BASIC16.94■□□□□ 0.3
PRKDCP78527 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC16.94■□□□□ 0.3
PRKDCP78527 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC16.94■□□□□ 0.3
PRKDCP78527 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKDCP78527 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKDCP78527 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
PRKDCP78527 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
PRKDCP78527 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC16.93■□□□□ 0.3
PRKDCP78527 CD99P1-205ENST00000527459 561 ntBASIC16.93■□□□□ 0.3
PRKDCP78527 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PRKDCP78527 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKDCP78527 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKDCP78527 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKDCP78527 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PRKDCP78527 AC090877.2-201ENST00000558441 1738 ntBASIC16.93■□□□□ 0.3
PRKDCP78527 STX7-201ENST00000367937 1090 ntTSL 5 BASIC16.93■□□□□ 0.3
PRKDCP78527 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PRKDCP78527 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC16.93■□□□□ 0.3
PRKDCP78527 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKDCP78527 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKDCP78527 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PRKDCP78527 AC012414.1-201ENST00000556676 535 ntBASIC16.92■□□□□ 0.3
PRKDCP78527 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKDCP78527 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKDCP78527 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PRKDCP78527 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PRKDCP78527 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC16.92■□□□□ 0.3
PRKDCP78527 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PRKDCP78527 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC16.92■□□□□ 0.3
PRKDCP78527 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC16.92■□□□□ 0.3
PRKDCP78527 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC16.92■□□□□ 0.3
PRKDCP78527 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PRKDCP78527 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKDCP78527 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
PRKDCP78527 WT1-AS_3.1-201ENST00000613262 234 ntBASIC16.92■□□□□ 0.3
PRKDCP78527 MIR6084-201ENST00000622012 110 ntBASIC16.92■□□□□ 0.3
PRKDCP78527 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKDCP78527 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PRKDCP78527 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PRKDCP78527 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKDCP78527 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC16.91■□□□□ 0.3
PRKDCP78527 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.91■□□□□ 0.3
PRKDCP78527 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.91■□□□□ 0.3
PRKDCP78527 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC16.91■□□□□ 0.3
PRKDCP78527 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKDCP78527 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKDCP78527 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC16.91■□□□□ 0.3
PRKDCP78527 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKDCP78527 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKDCP78527 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC16.91■□□□□ 0.3
PRKDCP78527 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC16.91■□□□□ 0.3
PRKDCP78527 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC16.91■□□□□ 0.3
PRKDCP78527 MIR3181-201ENST00000578512 73 ntBASIC16.9■□□□□ 0.3
PRKDCP78527 PROC-203ENST00000409048 1586 ntTSL 5 BASIC16.9■□□□□ 0.3
PRKDCP78527 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
PRKDCP78527 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PRKDCP78527 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PRKDCP78527 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
PRKDCP78527 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PRKDCP78527 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PRKDCP78527 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
PRKDCP78527 LBH-205ENST00000407930 756 ntTSL 2 BASIC16.89■□□□□ 0.3
PRKDCP78527 SSSCA1-AS1-201ENST00000567594 614 ntBASIC16.89■□□□□ 0.3
PRKDCP78527 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.3
PRKDCP78527 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
PRKDCP78527 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PRKDCP78527 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC16.89■□□□□ 0.29
PRKDCP78527 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
PRKDCP78527 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PRKDCP78527 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC16.88■□□□□ 0.29
PRKDCP78527 MIR663A-201ENST00000385250 93 ntBASIC16.88■□□□□ 0.29
PRKDCP78527 HES6-206ENST00000409574 738 ntTSL 2 BASIC16.88■□□□□ 0.29
PRKDCP78527 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC16.88■□□□□ 0.29
PRKDCP78527 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
PRKDCP78527 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PRKDCP78527 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC16.88■□□□□ 0.29
PRKDCP78527 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PRKDCP78527 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
PRKDCP78527 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PRKDCP78527 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC16.87■□□□□ 0.29
PRKDCP78527 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PRKDCP78527 AC245100.8-202ENST00000629247 1058 ntBASIC16.87■□□□□ 0.29
PRKDCP78527 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PRKDCP78527 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
PRKDCP78527 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC16.87■□□□□ 0.29
PRKDCP78527 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC16.86■□□□□ 0.29
PRKDCP78527 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKDCP78527 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PRKDCP78527 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PRKDCP78527 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PRKDCP78527 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKDCP78527 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PRKDCP78527 AP005435.1-201ENST00000529293 1178 ntBASIC16.86■□□□□ 0.29
PRKDCP78527 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
PRKDCP78527 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKDCP78527 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms