Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 FAT1-206ENST00000508035 341 ntTSL 24.87□□□□□ -1.636e-7■■■■□ 21.6
YBX3P16989 COPS3-210ENST00000492672 809 ntTSL 420.03■□□□□ 0.86e-7■■■■□ 21.6
YBX3P16989 COPS3-207ENST00000477299 656 ntTSL 520.03■□□□□ 0.86e-7■■■■□ 21.6
YBX3P16989 COPS3-218ENST00000584216 876 ntTSL 318.79■□□□□ 0.66e-7■■■■□ 21.6
YBX3P16989 COPS3-214ENST00000577246 639 ntTSL 218.79■□□□□ 0.66e-7■■■■□ 21.6
YBX3P16989 CCT3-202ENST00000368256 1063 ntTSL 313.48□□□□□ -0.252e-14■■■■□ 21.6
YBX3P16989 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.252e-6■■■■□ 21.6
YBX3P16989 KPNB1-204ENST00000577875 605 ntTSL 36.88□□□□□ -1.314e-7■■■■□ 21.6
YBX3P16989 RPL30-207ENST00000520998 747 ntTSL 220.05■□□□□ 0.84e-68■■■■□ 21.5
YBX3P16989 RPL30-208ENST00000521112 573 ntTSL 1 (best)17.99■□□□□ 0.474e-68■■■■□ 21.5
YBX3P16989 GLO1-202ENST00000470973 1939 ntTSL 27.85□□□□□ -1.152e-8■■■■□ 21.5
YBX3P16989 SEC24D-204ENST00000502830 422 ntTSL 26.04□□□□□ -1.446e-9■■■■□ 21.5
YBX3P16989 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.692e-6■■■■□ 21.5
YBX3P16989 PPP2R5A-202ENST00000479259 740 ntTSL 58.06□□□□□ -1.122e-6■■■■□ 21.5
YBX3P16989 PPP2R5A-204ENST00000498129 745 ntTSL 57.91□□□□□ -1.142e-6■■■■□ 21.5
YBX3P16989 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC5.49□□□□□ -1.532e-6■■■■□ 21.5
YBX3P16989 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.459e-7■■■■□ 21.5
YBX3P16989 CDC14A-201ENST00000336454 4137 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.329e-7■■■■□ 21.5
YBX3P16989 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.17□□□□□ -1.589e-7■■■■□ 21.5
YBX3P16989 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.539e-7■■■■□ 21.5
YBX3P16989 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.423e-6■■■■□ 21.5
YBX3P16989 GUSB-209ENST00000466883 2555 ntTSL 215.99■□□□□ 0.156e-7■■■■□ 21.5
YBX3P16989 ATP5F1-206ENST00000493119 716 ntTSL 320.41■□□□□ 0.868e-16■■■■□ 21.5
YBX3P16989 ATP5F1-205ENST00000483994 678 ntTSL 2 BASIC13.76□□□□□ -0.218e-16■■■■□ 21.5
YBX3P16989 AFG3L2-203ENST00000590811 627 ntTSL 323.31■■□□□ 1.326e-7■■■■□ 21.5
YBX3P16989 LYPLA1-207ENST00000519926 857 ntTSL 316.91■□□□□ 0.33e-8■■■■□ 21.5
YBX3P16989 LYPLA1-203ENST00000517297 927 ntTSL 1 (best)11.69□□□□□ -0.543e-8■■■■□ 21.5
YBX3P16989 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC28.61■■■□□ 2.173e-15■■■■□ 21.5
YBX3P16989 BRD2-215ENST00000580234 718 ntTSL 423.72■■□□□ 1.393e-15■■■■□ 21.5
YBX3P16989 TADA3-203ENST00000439043 873 ntTSL 220.68■□□□□ 0.94e-6■■■■□ 21.5
YBX3P16989 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.58■□□□□ 0.884e-6■■■■□ 21.5
YBX3P16989 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.564e-6■■■■□ 21.5
YBX3P16989 TADA3-206ENST00000492635 576 ntTSL 318■□□□□ 0.474e-6■■■■□ 21.5
YBX3P16989 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.354e-6■■■■□ 21.5
YBX3P16989 DYNC1H1-204ENST00000555062 1351 ntTSL 222.12■■□□□ 1.132e-7■■■■□ 21.5
YBX3P16989 ISOC2-204ENST00000587226 854 ntTSL 521.16■□□□□ 0.982e-10■■■■□ 21.5
YBX3P16989 ISOC2-208ENST00000591718 786 ntTSL 221.02■□□□□ 0.962e-10■■■■□ 21.5
YBX3P16989 ISOC2-205ENST00000589080 763 ntTSL 219.66■□□□□ 0.742e-10■■■■□ 21.5
YBX3P16989 ISOC2-206ENST00000589108 706 ntTSL 219.31■□□□□ 0.682e-10■■■■□ 21.5
YBX3P16989 ANXA2-219ENST00000559350 669 ntTSL 56.25□□□□□ -1.411e-10■■■■□ 21.5
YBX3P16989 ANXA2-231ENST00000560389 594 ntTSL 55.67□□□□□ -1.51e-10■■■■□ 21.5
YBX3P16989 ANXA2-215ENST00000558986 560 ntTSL 35.47□□□□□ -1.531e-10■■■■□ 21.5
YBX3P16989 AGPS-202ENST00000409888 815 ntTSL 4 BASIC34.15■■■■□ 3.064e-7■■■■□ 21.5
YBX3P16989 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.014e-7■■■■□ 21.5
YBX3P16989 AGPS-204ENST00000637633 2143 ntTSL 56.39□□□□□ -1.394e-7■■■■□ 21.5
YBX3P16989 PRKD3-210ENST00000494667 4326 ntTSL 1 (best)5.04□□□□□ -1.67e-8■■■■□ 21.5
YBX3P16989 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.817e-8■■■■□ 21.5
YBX3P16989 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.97e-8■■■■□ 21.5
YBX3P16989 CA5BP1-202ENST00000380333 926 ntTSL 216.98■□□□□ 0.311e-6■■■■□ 21.4
YBX3P16989 CA5B-210ENST00000498004 488 ntTSL 315.76■□□□□ 0.111e-6■■■■□ 21.4
YBX3P16989 CA5BP1-203ENST00000380334 1264 ntTSL 5 BASIC14.53□□□□□ -0.081e-6■■■■□ 21.4
YBX3P16989 NSUN2-203ENST00000504374 3217 ntTSL 217.12■□□□□ 0.332e-6■■■■□ 21.4
YBX3P16989 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.262e-6■■■■□ 21.4
YBX3P16989 DIAPH1-205ENST00000448451 2102 ntTSL 214.39□□□□□ -0.111e-10■■■■□ 21.4
YBX3P16989 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.534e-7■■■■□ 21.4
YBX3P16989 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.654e-7■■■■□ 21.4
YBX3P16989 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.944e-7■■■■□ 21.4
YBX3P16989 RNF44-202ENST00000504160 887 ntTSL 322.24■■□□□ 1.152e-8■■■■□ 21.4
YBX3P16989 RNF44-207ENST00000513029 1647 ntTSL 221.79■■□□□ 1.082e-8■■■■□ 21.4
YBX3P16989 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.112e-8■■■■□ 21.4
YBX3P16989 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.735e-7■■■■□ 21.3
YBX3P16989 METTL9-209ENST00000569290 480 ntTSL 26.79□□□□□ -1.323e-10■■■■□ 21.3
YBX3P16989 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.242e-18■■■■□ 21.3
YBX3P16989 SRSF9-206ENST00000603963 1043 ntTSL 529.19■■■□□ 2.262e-18■■■■□ 21.3
YBX3P16989 SRSF9-204ENST00000548792 1446 ntTSL 212.45□□□□□ -0.422e-18■■■■□ 21.3
YBX3P16989 GYG1-206ENST00000473005 713 ntTSL 36.47□□□□□ -1.375e-7■■■■□ 21.3
YBX3P16989 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.012e-9■■■■□ 21.3
YBX3P16989 EXT2-207ENST00000529186 1380 ntTSL 1 (best)12.4□□□□□ -0.423e-6■■■■□ 21.3
YBX3P16989 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.054e-7■■■■□ 21.3
YBX3P16989 STARD8-205ENST00000523864 4864 ntTSL 1 (best)14.73□□□□□ -0.054e-7■■■■□ 21.3
YBX3P16989 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.264e-7■■■■□ 21.3
YBX3P16989 CTSH-204ENST00000527715 2138 ntTSL 1 (best)13.31□□□□□ -0.282e-6■■■■□ 21.3
YBX3P16989 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.19■□□□□ 0.983e-7■■■■□ 21.3
YBX3P16989 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.753e-7■■■■□ 21.3
YBX3P16989 ZDHHC5-208ENST00000532842 440 ntTSL 513.43□□□□□ -0.263e-7■■■■□ 21.3
YBX3P16989 ZDHHC5-206ENST00000529447 901 ntTSL 512.41□□□□□ -0.423e-8■■■■□ 21.3
YBX3P16989 ZDHHC5-207ENST00000529480 3546 ntTSL 1 (best)9.19□□□□□ -0.943e-7■■■■□ 21.3
YBX3P16989 ZDHHC5-205ENST00000528177 577 ntTSL 47.98□□□□□ -1.133e-7■■■■□ 21.3
YBX3P16989 FCGR2A-212ENST00000491841 730 ntTSL 38.89□□□□□ -0.994e-12■■■■□ 21.3
YBX3P16989 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC6.9□□□□□ -1.34e-12■■■■□ 21.3
YBX3P16989 FCGR2A-203ENST00000459885 259 ntTSL 32.96□□□□□ -1.944e-12■■■■□ 21.3
YBX3P16989 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.014e-13■■■■□ 21.3
YBX3P16989 MFSD2B-205ENST00000495018 1156 ntTSL 1 (best)15.87■□□□□ 0.134e-13■■■■□ 21.3
YBX3P16989 MFSD2B-204ENST00000469562 2613 ntTSL 1 (best)15.83■□□□□ 0.134e-13■■■■□ 21.3
YBX3P16989 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.024e-13■■■■□ 21.3
YBX3P16989 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.241e-6■■■■□ 21.3
YBX3P16989 BAD-206ENST00000544271 552 ntTSL 426.55■■□□□ 1.841e-6■■■■□ 21.3
YBX3P16989 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.581e-6■■■■□ 21.3
YBX3P16989 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC24.64■■□□□ 1.541e-6■■■■□ 21.3
YBX3P16989 STARD8-204ENST00000488088 695 ntTSL 324.5■■□□□ 1.511e-6■■■■□ 21.3
YBX3P16989 SGF29-206ENST00000567564 788 ntTSL 522.69■■□□□ 1.221e-6■■■■□ 21.3
YBX3P16989 MSI2-210ENST00000579505 577 ntTSL 322.49■■□□□ 1.191e-6■■■■□ 21.3
YBX3P16989 BAD-202ENST00000394531 631 ntTSL 3 BASIC22.27■■□□□ 1.161e-6■■■■□ 21.3
YBX3P16989 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.87■■□□□ 1.091e-6■■■■□ 21.3
YBX3P16989 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.071e-6■■■■□ 21.3
YBX3P16989 BAD-207ENST00000544785 525 ntTSL 3 BASIC21.67■■□□□ 1.061e-6■■■■□ 21.3
YBX3P16989 SGF29-207ENST00000569581 738 ntTSL 221.17■□□□□ 0.981e-6■■■■□ 21.3
YBX3P16989 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.31■□□□□ 0.841e-6■■■■□ 21.3
YBX3P16989 BTBD2-208ENST00000590646 572 ntTSL 419.39■□□□□ 0.691e-6■■■■□ 21.3
YBX3P16989 BTBD2-205ENST00000588395 352 ntTSL 518.26■□□□□ 0.511e-6■■■■□ 21.3
Retrieved 100 of 29,075 protein–RNA pairs in 463.6 ms