Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.55■■□□□ 1.04
LDB3O75112 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.55■■□□□ 1.04
LDB3O75112 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LDB3O75112 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.55■■□□□ 1.04
LDB3O75112 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.55■■□□□ 1.04
LDB3O75112 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LDB3O75112 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.55■■□□□ 1.04
LDB3O75112 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LDB3O75112 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.54■■□□□ 1.04
LDB3O75112 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.54■■□□□ 1.04
LDB3O75112 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.54■■□□□ 1.04
LDB3O75112 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
LDB3O75112 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LDB3O75112 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
LDB3O75112 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LDB3O75112 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
LDB3O75112 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
LDB3O75112 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LDB3O75112 UNC93B8-201ENST00000511903 705 ntBASIC21.53■■□□□ 1.04
LDB3O75112 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LDB3O75112 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
LDB3O75112 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LDB3O75112 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LDB3O75112 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LDB3O75112 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LDB3O75112 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LDB3O75112 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
LDB3O75112 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.04
LDB3O75112 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LDB3O75112 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LDB3O75112 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LDB3O75112 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.52■■□□□ 1.04
LDB3O75112 MTDHP2-201ENST00000601468 714 ntBASIC21.52■■□□□ 1.04
LDB3O75112 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LDB3O75112 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LDB3O75112 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.03
LDB3O75112 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LDB3O75112 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
LDB3O75112 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.51■■□□□ 1.03
LDB3O75112 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LDB3O75112 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LDB3O75112 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.51■■□□□ 1.03
LDB3O75112 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.51■■□□□ 1.03
LDB3O75112 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
LDB3O75112 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LDB3O75112 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LDB3O75112 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LDB3O75112 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.51■■□□□ 1.03
LDB3O75112 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
LDB3O75112 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
LDB3O75112 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
LDB3O75112 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.51■■□□□ 1.03
LDB3O75112 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.51■■□□□ 1.03
LDB3O75112 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB3O75112 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB3O75112 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB3O75112 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.5■■□□□ 1.03
LDB3O75112 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.5■■□□□ 1.03
LDB3O75112 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LDB3O75112 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB3O75112 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
LDB3O75112 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.49■■□□□ 1.03
LDB3O75112 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.49■■□□□ 1.03
LDB3O75112 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LDB3O75112 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LDB3O75112 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.49■■□□□ 1.03
LDB3O75112 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.49■■□□□ 1.03
LDB3O75112 AC010997.5-201ENST00000609182 354 ntBASIC21.49■■□□□ 1.03
LDB3O75112 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB3O75112 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB3O75112 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
LDB3O75112 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB3O75112 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB3O75112 ALDH1A3-203ENST00000557963 1670 ntBASIC21.48■■□□□ 1.03
LDB3O75112 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB3O75112 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB3O75112 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.48■■□□□ 1.03
LDB3O75112 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.48■■□□□ 1.03
LDB3O75112 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB3O75112 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB3O75112 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB3O75112 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB3O75112 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.47■■□□□ 1.03
LDB3O75112 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LDB3O75112 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
LDB3O75112 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.47■■□□□ 1.03
LDB3O75112 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.47■■□□□ 1.03
LDB3O75112 MIR6722-201ENST00000617286 78 ntBASIC21.47■■□□□ 1.03
LDB3O75112 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LDB3O75112 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.47■■□□□ 1.03
LDB3O75112 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
LDB3O75112 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.46■■□□□ 1.03
LDB3O75112 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDB3O75112 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDB3O75112 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.46■■□□□ 1.03
LDB3O75112 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.46■■□□□ 1.03
LDB3O75112 KRT16P3-201ENST00000439127 1283 ntBASIC21.46■■□□□ 1.03
LDB3O75112 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDB3O75112 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
LDB3O75112 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms