Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 DUX4L23-201ENST00000615195 1269 ntBASIC22.61■■□□□ 1.21
SNX3O60493 DUX4L24-201ENST00000617576 1269 ntBASIC22.61■■□□□ 1.21
SNX3O60493 DUX4L22-201ENST00000618238 1269 ntBASIC22.61■■□□□ 1.21
SNX3O60493 DUX4L20-201ENST00000619712 1269 ntBASIC22.61■■□□□ 1.21
SNX3O60493 DUX4L21-201ENST00000622058 1269 ntBASIC22.61■■□□□ 1.21
SNX3O60493 DUX4L10-201ENST00000622460 1267 ntBASIC22.61■■□□□ 1.21
SNX3O60493 DUX4L25-201ENST00000624915 1269 ntBASIC22.61■■□□□ 1.21
SNX3O60493 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SNX3O60493 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.61■■□□□ 1.21
SNX3O60493 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SNX3O60493 MYB-221ENST00000527615 2381 ntTSL 5 BASIC22.61■■□□□ 1.21
SNX3O60493 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SNX3O60493 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SNX3O60493 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
SNX3O60493 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.6■■□□□ 1.21
SNX3O60493 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
SNX3O60493 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.6■■□□□ 1.21
SNX3O60493 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SNX3O60493 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC22.6■■□□□ 1.21
SNX3O60493 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.6■■□□□ 1.21
SNX3O60493 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SNX3O60493 AC242852.2-201ENST00000615738 1807 ntBASIC22.59■■□□□ 1.21
SNX3O60493 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SNX3O60493 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.59■■□□□ 1.21
SNX3O60493 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC22.59■■□□□ 1.21
SNX3O60493 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SNX3O60493 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SNX3O60493 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.58■■□□□ 1.21
SNX3O60493 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.58■■□□□ 1.21
SNX3O60493 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
SNX3O60493 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SNX3O60493 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC22.58■■□□□ 1.21
SNX3O60493 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SNX3O60493 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
SNX3O60493 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
SNX3O60493 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
SNX3O60493 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
SNX3O60493 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC22.58■■□□□ 1.2
SNX3O60493 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SNX3O60493 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SNX3O60493 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SNX3O60493 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SNX3O60493 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SNX3O60493 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.57■■□□□ 1.2
SNX3O60493 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.57■■□□□ 1.2
SNX3O60493 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
SNX3O60493 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SNX3O60493 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SNX3O60493 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SNX3O60493 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SNX3O60493 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SNX3O60493 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SNX3O60493 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SNX3O60493 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNX3O60493 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNX3O60493 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNX3O60493 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNX3O60493 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNX3O60493 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.55■■□□□ 1.2
SNX3O60493 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNX3O60493 SLC25A24-204ENST00000569674 2357 ntBASIC22.55■■□□□ 1.2
SNX3O60493 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNX3O60493 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.55■■□□□ 1.2
SNX3O60493 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
SNX3O60493 LINC01971-201ENST00000617888 1048 ntBASIC22.55■■□□□ 1.2
SNX3O60493 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNX3O60493 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNX3O60493 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SNX3O60493 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC22.54■■□□□ 1.2
SNX3O60493 COMT-203ENST00000403184 2217 ntTSL 2 BASIC22.54■■□□□ 1.2
SNX3O60493 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SNX3O60493 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SNX3O60493 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SNX3O60493 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
SNX3O60493 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22.54■■□□□ 1.2
SNX3O60493 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
SNX3O60493 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.54■■□□□ 1.2
SNX3O60493 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
SNX3O60493 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SNX3O60493 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SNX3O60493 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SNX3O60493 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SNX3O60493 AC126177.7-201ENST00000547904 679 ntBASIC22.53■■□□□ 1.2
SNX3O60493 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SNX3O60493 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SNX3O60493 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC22.53■■□□□ 1.2
SNX3O60493 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
SNX3O60493 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SNX3O60493 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
SNX3O60493 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SNX3O60493 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SNX3O60493 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SNX3O60493 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SNX3O60493 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SNX3O60493 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.52■■□□□ 1.2
SNX3O60493 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SNX3O60493 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SNX3O60493 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SNX3O60493 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC22.51■■□□□ 1.19
SNX3O60493 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms