Protein–RNA interactions for Protein: O60341

KDM1A, Lysine-specific histone demethylase 1A, humanhuman

Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM1AO60341 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.38■■□□□ 1.17
KDM1AO60341 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
KDM1AO60341 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.38■■□□□ 1.17
KDM1AO60341 SENP5-202ENST00000419026 973 ntTSL 3 BASIC22.38■■□□□ 1.17
KDM1AO60341 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC22.38■■□□□ 1.17
KDM1AO60341 CREM-229ENST00000474362 1030 ntTSL 2 BASIC22.38■■□□□ 1.17
KDM1AO60341 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC22.38■■□□□ 1.17
KDM1AO60341 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.38■■□□□ 1.17
KDM1AO60341 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
KDM1AO60341 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
KDM1AO60341 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
KDM1AO60341 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
KDM1AO60341 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
KDM1AO60341 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
KDM1AO60341 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
KDM1AO60341 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
KDM1AO60341 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
KDM1AO60341 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
KDM1AO60341 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
KDM1AO60341 TSPY9P-201ENST00000440215 945 ntBASIC22.37■■□□□ 1.17
KDM1AO60341 TSPY11P-201ENST00000442607 1045 ntBASIC22.37■■□□□ 1.17
KDM1AO60341 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC22.37■■□□□ 1.17
KDM1AO60341 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
KDM1AO60341 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC22.37■■□□□ 1.17
KDM1AO60341 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
KDM1AO60341 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
KDM1AO60341 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC22.36■■□□□ 1.17
KDM1AO60341 SNX5-217ENST00000606557 1087 ntBASIC22.36■■□□□ 1.17
KDM1AO60341 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.36■■□□□ 1.17
KDM1AO60341 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.36■■□□□ 1.17
KDM1AO60341 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
KDM1AO60341 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.36■■□□□ 1.17
KDM1AO60341 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
KDM1AO60341 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
KDM1AO60341 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
KDM1AO60341 AC141586.4-201ENST00000624558 1573 ntBASIC22.35■■□□□ 1.17
KDM1AO60341 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.35■■□□□ 1.17
KDM1AO60341 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC22.35■■□□□ 1.17
KDM1AO60341 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.35■■□□□ 1.17
KDM1AO60341 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.35■■□□□ 1.17
KDM1AO60341 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
KDM1AO60341 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
KDM1AO60341 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
KDM1AO60341 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
KDM1AO60341 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
KDM1AO60341 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
KDM1AO60341 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
KDM1AO60341 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
KDM1AO60341 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.34■■□□□ 1.17
KDM1AO60341 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
KDM1AO60341 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
KDM1AO60341 KRT16P3-201ENST00000439127 1283 ntBASIC22.34■■□□□ 1.17
KDM1AO60341 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
KDM1AO60341 AC010997.5-201ENST00000609182 354 ntBASIC22.34■■□□□ 1.17
KDM1AO60341 MIR6722-201ENST00000617286 78 ntBASIC22.34■■□□□ 1.17
KDM1AO60341 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC22.34■■□□□ 1.17
KDM1AO60341 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
KDM1AO60341 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
KDM1AO60341 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
KDM1AO60341 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC22.33■■□□□ 1.17
KDM1AO60341 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.33■■□□□ 1.17
KDM1AO60341 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
KDM1AO60341 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
KDM1AO60341 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.33■■□□□ 1.17
KDM1AO60341 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
KDM1AO60341 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC22.33■■□□□ 1.17
KDM1AO60341 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC22.33■■□□□ 1.17
KDM1AO60341 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC22.33■■□□□ 1.17
KDM1AO60341 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
KDM1AO60341 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
KDM1AO60341 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC22.33■■□□□ 1.16
KDM1AO60341 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
KDM1AO60341 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
KDM1AO60341 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
KDM1AO60341 AC131274.2-201ENST00000580697 1507 ntBASIC22.32■■□□□ 1.16
KDM1AO60341 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
KDM1AO60341 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
KDM1AO60341 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
KDM1AO60341 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC22.32■■□□□ 1.16
KDM1AO60341 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC22.32■■□□□ 1.16
KDM1AO60341 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC22.32■■□□□ 1.16
KDM1AO60341 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC22.32■■□□□ 1.16
KDM1AO60341 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
KDM1AO60341 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
KDM1AO60341 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
KDM1AO60341 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
KDM1AO60341 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22.31■■□□□ 1.16
KDM1AO60341 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.31■■□□□ 1.16
KDM1AO60341 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
KDM1AO60341 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC22.31■■□□□ 1.16
KDM1AO60341 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
KDM1AO60341 EXOG-217ENST00000630638 197 ntTSL 5 BASIC22.31■■□□□ 1.16
KDM1AO60341 AC133561.1-201ENST00000568600 2415 ntBASIC22.31■■□□□ 1.16
KDM1AO60341 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
KDM1AO60341 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
KDM1AO60341 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
KDM1AO60341 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
KDM1AO60341 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
KDM1AO60341 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
KDM1AO60341 UNC93B8-201ENST00000511903 705 ntBASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms