Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
PRKNO60260 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PRKNO60260 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
PRKNO60260 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
PRKNO60260 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PRKNO60260 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.32■■□□□ 1
PRKNO60260 MIR6724-1-201ENST00000616420 92 ntBASIC21.32■■□□□ 1
PRKNO60260 MIR6724-2-201ENST00000616483 92 ntBASIC21.32■■□□□ 1
PRKNO60260 MIR6724-4-201ENST00000617390 92 ntBASIC21.32■■□□□ 1
PRKNO60260 MIR6724-3-201ENST00000622482 92 ntBASIC21.32■■□□□ 1
PRKNO60260 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.32■■□□□ 1
PRKNO60260 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PRKNO60260 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
PRKNO60260 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PRKNO60260 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.31■■□□□ 1
PRKNO60260 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.31■■□□□ 1
PRKNO60260 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PRKNO60260 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.31■■□□□ 1
PRKNO60260 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
PRKNO60260 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.31■■□□□ 1
PRKNO60260 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.31■■□□□ 1
PRKNO60260 MIR6722-201ENST00000617286 78 ntBASIC21.31■■□□□ 1
PRKNO60260 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
PRKNO60260 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.31■■□□□ 1
PRKNO60260 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.31■■□□□ 1
PRKNO60260 AC004812.2-201ENST00000611079 2094 ntBASIC21.3■■□□□ 1
PRKNO60260 AL022069.1-201ENST00000568025 1636 ntBASIC21.3■■□□□ 1
PRKNO60260 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
PRKNO60260 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.3■■□□□ 1
PRKNO60260 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.3■■□□□ 1
PRKNO60260 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.3■■□□□ 1
PRKNO60260 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PRKNO60260 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
PRKNO60260 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.29■■□□□ 1
PRKNO60260 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.29■■□□□ 1
PRKNO60260 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
PRKNO60260 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.29■■□□□ 1
PRKNO60260 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.29■■□□□ 1
PRKNO60260 AL117332.1-201ENST00000622628 974 ntBASIC21.29■■□□□ 1
PRKNO60260 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.29■■□□□ 1
PRKNO60260 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.28■■□□□ 1
PRKNO60260 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.28■■□□□ 1
PRKNO60260 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.28■■□□□ 1
PRKNO60260 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.28■■□□□ 1
PRKNO60260 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.28■■□□□ 1
PRKNO60260 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.28■■□□□ 1
PRKNO60260 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.28■■□□□ 1
PRKNO60260 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
PRKNO60260 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
PRKNO60260 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
PRKNO60260 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.28■■□□□ 1
PRKNO60260 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
PRKNO60260 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
PRKNO60260 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.27■■□□□ 1
PRKNO60260 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.27■■□□□ 1
PRKNO60260 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.27■■□□□ 1
PRKNO60260 ABCB10P4-201ENST00000566803 2184 ntBASIC21.27■■□□□ 1
PRKNO60260 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
PRKNO60260 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PRKNO60260 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PRKNO60260 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PRKNO60260 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PRKNO60260 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.26■□□□□ 0.99
PRKNO60260 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
PRKNO60260 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PRKNO60260 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PRKNO60260 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.25■□□□□ 0.99
PRKNO60260 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PRKNO60260 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PRKNO60260 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.25■□□□□ 0.99
PRKNO60260 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.25■□□□□ 0.99
PRKNO60260 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PRKNO60260 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.25■□□□□ 0.99
PRKNO60260 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PRKNO60260 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.25■□□□□ 0.99
PRKNO60260 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.25■□□□□ 0.99
PRKNO60260 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PRKNO60260 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PRKNO60260 LINC00543-201ENST00000567234 1845 ntBASIC21.25■□□□□ 0.99
PRKNO60260 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
PRKNO60260 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRKNO60260 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.24■□□□□ 0.99
PRKNO60260 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.24■□□□□ 0.99
PRKNO60260 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.24■□□□□ 0.99
PRKNO60260 MIR3621-201ENST00000580529 85 ntBASIC21.24■□□□□ 0.99
PRKNO60260 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRKNO60260 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PRKNO60260 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRKNO60260 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.23■□□□□ 0.99
PRKNO60260 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.23■□□□□ 0.99
PRKNO60260 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.23■□□□□ 0.99
PRKNO60260 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PRKNO60260 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRKNO60260 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRKNO60260 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRKNO60260 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRKNO60260 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRKNO60260 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PRKNO60260 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PRKNO60260 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms