Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.36■□□□□ 0.69
SDCBPO00560 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SDCBPO00560 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.36■□□□□ 0.69
SDCBPO00560 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.36■□□□□ 0.69
SDCBPO00560 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.36■□□□□ 0.69
SDCBPO00560 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDCBPO00560 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SDCBPO00560 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDCBPO00560 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDCBPO00560 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDCBPO00560 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDCBPO00560 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDCBPO00560 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SDCBPO00560 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDCBPO00560 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.35■□□□□ 0.69
SDCBPO00560 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SDCBPO00560 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SDCBPO00560 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SDCBPO00560 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDCBPO00560 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SDCBPO00560 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SDCBPO00560 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDCBPO00560 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDCBPO00560 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SDCBPO00560 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SDCBPO00560 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.34■□□□□ 0.69
SDCBPO00560 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDCBPO00560 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SDCBPO00560 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SDCBPO00560 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDCBPO00560 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDCBPO00560 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SDCBPO00560 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDCBPO00560 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SDCBPO00560 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.33■□□□□ 0.69
SDCBPO00560 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.33■□□□□ 0.69
SDCBPO00560 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
SDCBPO00560 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SDCBPO00560 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
SDCBPO00560 KRT18P60-201ENST00000312876 1297 ntBASIC19.33■□□□□ 0.68
SDCBPO00560 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.33■□□□□ 0.68
SDCBPO00560 AC129492.7-201ENST00000622992 756 ntBASIC19.33■□□□□ 0.68
SDCBPO00560 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SDCBPO00560 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SDCBPO00560 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SDCBPO00560 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SDCBPO00560 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.68
SDCBPO00560 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SDCBPO00560 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SDCBPO00560 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDCBPO00560 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDCBPO00560 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDCBPO00560 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDCBPO00560 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SDCBPO00560 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SDCBPO00560 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDCBPO00560 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.32■□□□□ 0.68
SDCBPO00560 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.32■□□□□ 0.68
SDCBPO00560 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SDCBPO00560 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.32■□□□□ 0.68
SDCBPO00560 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDCBPO00560 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDCBPO00560 CLDN5-201ENST00000403084 2357 ntBASIC19.32■□□□□ 0.68
SDCBPO00560 AL117328.2-201ENST00000624617 1940 ntBASIC19.31■□□□□ 0.68
SDCBPO00560 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.31■□□□□ 0.68
SDCBPO00560 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SDCBPO00560 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 AC087393.1-201ENST00000582896 145 ntBASIC19.31■□□□□ 0.68
SDCBPO00560 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.31■□□□□ 0.68
SDCBPO00560 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SDCBPO00560 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.31■□□□□ 0.68
SDCBPO00560 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SDCBPO00560 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SDCBPO00560 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SDCBPO00560 NTF6A-201ENST00000591175 560 ntBASIC19.3■□□□□ 0.68
SDCBPO00560 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SDCBPO00560 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
SDCBPO00560 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SDCBPO00560 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SDCBPO00560 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SDCBPO00560 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.3■□□□□ 0.68
SDCBPO00560 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SDCBPO00560 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDCBPO00560 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDCBPO00560 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDCBPO00560 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms