Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGN4O00479 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.34■■□□□ 1.01
HMGN4O00479 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
HMGN4O00479 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HMGN4O00479 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
HMGN4O00479 AC120024.1-201ENST00000562672 995 ntBASIC21.34■■□□□ 1.01
HMGN4O00479 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGN4O00479 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGN4O00479 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
HMGN4O00479 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
HMGN4O00479 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
HMGN4O00479 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGN4O00479 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HMGN4O00479 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGN4O00479 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.33■■□□□ 1.01
HMGN4O00479 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.33■■□□□ 1.01
HMGN4O00479 AC010980.1-201ENST00000587192 1142 ntBASIC21.33■■□□□ 1.01
HMGN4O00479 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGN4O00479 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGN4O00479 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
HMGN4O00479 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGN4O00479 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.32■■□□□ 1
HMGN4O00479 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.32■■□□□ 1
HMGN4O00479 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.32■■□□□ 1
HMGN4O00479 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGN4O00479 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.32■■□□□ 1
HMGN4O00479 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.32■■□□□ 1
HMGN4O00479 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGN4O00479 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.31■■□□□ 1
HMGN4O00479 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.31■■□□□ 1
HMGN4O00479 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.31■■□□□ 1
HMGN4O00479 AC012676.1-201ENST00000574705 1949 ntBASIC21.31■■□□□ 1
HMGN4O00479 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.3■■□□□ 1
HMGN4O00479 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
HMGN4O00479 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGN4O00479 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.3■■□□□ 1
HMGN4O00479 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
HMGN4O00479 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGN4O00479 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.3■■□□□ 1
HMGN4O00479 KRT18P24-201ENST00000344739 1156 ntBASIC21.3■■□□□ 1
HMGN4O00479 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.3■■□□□ 1
HMGN4O00479 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGN4O00479 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.3■■□□□ 1
HMGN4O00479 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
HMGN4O00479 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.29■■□□□ 1
HMGN4O00479 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
HMGN4O00479 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.29■■□□□ 1
HMGN4O00479 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
HMGN4O00479 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
HMGN4O00479 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.29■■□□□ 1
HMGN4O00479 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.29■■□□□ 1
HMGN4O00479 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.29■■□□□ 1
HMGN4O00479 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.29■■□□□ 1
HMGN4O00479 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.29■■□□□ 1
HMGN4O00479 ANOS2P-203ENST00000472227 1816 ntBASIC21.29■■□□□ 1
HMGN4O00479 C9orf163-202ENST00000624034 2573 ntBASIC21.28■■□□□ 1
HMGN4O00479 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.28■■□□□ 1
HMGN4O00479 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
HMGN4O00479 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.28■■□□□ 1
HMGN4O00479 AC012354.3-201ENST00000623734 483 ntBASIC21.28■■□□□ 1
HMGN4O00479 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.28■■□□□ 1
HMGN4O00479 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGN4O00479 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
HMGN4O00479 AF131216.4-201ENST00000638924 1588 ntBASIC21.27■■□□□ 1
HMGN4O00479 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.27■■□□□ 1
HMGN4O00479 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGN4O00479 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGN4O00479 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.27■■□□□ 1
HMGN4O00479 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.27■■□□□ 1
HMGN4O00479 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.27■■□□□ 1
HMGN4O00479 MIR4281-201ENST00000580852 62 ntBASIC21.27■■□□□ 1
HMGN4O00479 THA1P-201ENST00000590384 1145 ntBASIC21.27■■□□□ 1
HMGN4O00479 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
HMGN4O00479 ALDH1A3-203ENST00000557963 1670 ntBASIC21.27■■□□□ 1
HMGN4O00479 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.27■■□□□ 1
HMGN4O00479 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGN4O00479 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGN4O00479 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
HMGN4O00479 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGN4O00479 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HMGN4O00479 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.26■□□□□ 0.99
HMGN4O00479 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HMGN4O00479 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
HMGN4O00479 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
HMGN4O00479 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
HMGN4O00479 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.25■□□□□ 0.99
HMGN4O00479 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGN4O00479 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.25■□□□□ 0.99
HMGN4O00479 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.25■□□□□ 0.99
HMGN4O00479 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.25■□□□□ 0.99
HMGN4O00479 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
HMGN4O00479 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGN4O00479 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGN4O00479 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.25■□□□□ 0.99
HMGN4O00479 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HMGN4O00479 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGN4O00479 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
HMGN4O00479 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGN4O00479 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGN4O00479 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms