Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
COL6A5A8TX70 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.17■□□□□ 0.5
COL6A5A8TX70 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A5A8TX70 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A5A8TX70 AC137761.2-201ENST00000561729 223 ntBASIC18.17■□□□□ 0.5
COL6A5A8TX70 AC145350.3-201ENST00000569033 163 ntBASIC18.17■□□□□ 0.5
COL6A5A8TX70 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.17■□□□□ 0.5
COL6A5A8TX70 AC241377.3-202ENST00000626088 1088 ntBASIC18.17■□□□□ 0.5
COL6A5A8TX70 AC241585.3-202ENST00000628937 1088 ntBASIC18.17■□□□□ 0.5
COL6A5A8TX70 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC18.16■□□□□ 0.5
COL6A5A8TX70 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.16■□□□□ 0.5
COL6A5A8TX70 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.16■□□□□ 0.5
COL6A5A8TX70 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.16■□□□□ 0.5
COL6A5A8TX70 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A5A8TX70 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
COL6A5A8TX70 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL6A5A8TX70 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
COL6A5A8TX70 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A5A8TX70 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A5A8TX70 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A5A8TX70 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A5A8TX70 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
COL6A5A8TX70 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A5A8TX70 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A5A8TX70 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.15■□□□□ 0.5
COL6A5A8TX70 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A5A8TX70 MIR6084-201ENST00000622012 110 ntBASIC18.15■□□□□ 0.5
COL6A5A8TX70 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.15■□□□□ 0.5
COL6A5A8TX70 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.15■□□□□ 0.5
COL6A5A8TX70 AC012414.1-201ENST00000556676 535 ntBASIC18.15■□□□□ 0.5
COL6A5A8TX70 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
COL6A5A8TX70 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A5A8TX70 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL6A5A8TX70 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A5A8TX70 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A5A8TX70 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
COL6A5A8TX70 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.14■□□□□ 0.49
COL6A5A8TX70 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
COL6A5A8TX70 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.14■□□□□ 0.49
COL6A5A8TX70 FOXO3B-201ENST00000395675 1928 ntBASIC18.14■□□□□ 0.49
COL6A5A8TX70 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A5A8TX70 MIR572-201ENST00000384983 95 ntBASIC18.14■□□□□ 0.49
COL6A5A8TX70 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A5A8TX70 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A5A8TX70 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A5A8TX70 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
COL6A5A8TX70 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A5A8TX70 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.13■□□□□ 0.49
COL6A5A8TX70 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
COL6A5A8TX70 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
COL6A5A8TX70 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
COL6A5A8TX70 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.13■□□□□ 0.49
COL6A5A8TX70 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.13■□□□□ 0.49
COL6A5A8TX70 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.13■□□□□ 0.49
COL6A5A8TX70 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
COL6A5A8TX70 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A5A8TX70 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
COL6A5A8TX70 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC18.12■□□□□ 0.49
COL6A5A8TX70 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
COL6A5A8TX70 KRT18P6-201ENST00000555540 1265 ntBASIC18.12■□□□□ 0.49
COL6A5A8TX70 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
COL6A5A8TX70 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
COL6A5A8TX70 GPX1P1-201ENST00000388829 606 ntBASIC18.12■□□□□ 0.49
COL6A5A8TX70 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A5A8TX70 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A5A8TX70 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.11■□□□□ 0.49
COL6A5A8TX70 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.11■□□□□ 0.49
COL6A5A8TX70 MIR663A-201ENST00000385250 93 ntBASIC18.11■□□□□ 0.49
COL6A5A8TX70 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.11■□□□□ 0.49
COL6A5A8TX70 AC126544.1-201ENST00000580842 1059 ntBASIC18.11■□□□□ 0.49
COL6A5A8TX70 AL354811.1-201ENST00000610286 706 ntBASIC18.11■□□□□ 0.49
COL6A5A8TX70 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A5A8TX70 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.11■□□□□ 0.49
COL6A5A8TX70 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.11■□□□□ 0.49
COL6A5A8TX70 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A5A8TX70 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.1■□□□□ 0.49
COL6A5A8TX70 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.1■□□□□ 0.49
COL6A5A8TX70 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.1■□□□□ 0.49
COL6A5A8TX70 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A5A8TX70 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A5A8TX70 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A5A8TX70 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A5A8TX70 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A5A8TX70 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A5A8TX70 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A5A8TX70 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.09■□□□□ 0.49
COL6A5A8TX70 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.09■□□□□ 0.49
COL6A5A8TX70 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A5A8TX70 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A5A8TX70 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A5A8TX70 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A5A8TX70 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
COL6A5A8TX70 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.09■□□□□ 0.49
COL6A5A8TX70 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A5A8TX70 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A5A8TX70 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL6A5A8TX70 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL6A5A8TX70 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL6A5A8TX70 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC18.08■□□□□ 0.49
COL6A5A8TX70 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms