Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.91■□□□□ 0.94
COL6A6A6NMZ7 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A6A6NMZ7 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A6A6NMZ7 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A6A6NMZ7 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.91■□□□□ 0.94
COL6A6A6NMZ7 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
COL6A6A6NMZ7 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A6A6NMZ7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 AC026185.1-201ENST00000445748 174 ntBASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.9■□□□□ 0.94
COL6A6A6NMZ7 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL6A6A6NMZ7 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
COL6A6A6NMZ7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.89■□□□□ 0.94
COL6A6A6NMZ7 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.89■□□□□ 0.94
COL6A6A6NMZ7 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL6A6A6NMZ7 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A6A6NMZ7 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A6A6NMZ7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
COL6A6A6NMZ7 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.89■□□□□ 0.93
COL6A6A6NMZ7 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A6A6NMZ7 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.88■□□□□ 0.93
COL6A6A6NMZ7 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.88■□□□□ 0.93
COL6A6A6NMZ7 AC126544.1-201ENST00000580842 1059 ntBASIC20.88■□□□□ 0.93
COL6A6A6NMZ7 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.88■□□□□ 0.93
COL6A6A6NMZ7 TSPY26P-201ENST00000476365 1326 ntBASIC20.88■□□□□ 0.93
COL6A6A6NMZ7 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A6A6NMZ7 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.88■□□□□ 0.93
COL6A6A6NMZ7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.88■□□□□ 0.93
COL6A6A6NMZ7 AC093827.2-201ENST00000512654 315 ntBASIC20.87■□□□□ 0.93
COL6A6A6NMZ7 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A6A6NMZ7 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A6A6NMZ7 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
COL6A6A6NMZ7 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.86■□□□□ 0.93
COL6A6A6NMZ7 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A6A6NMZ7 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.86■□□□□ 0.93
COL6A6A6NMZ7 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.86■□□□□ 0.93
COL6A6A6NMZ7 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC20.86■□□□□ 0.93
COL6A6A6NMZ7 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A6A6NMZ7 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A6A6NMZ7 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.85■□□□□ 0.93
COL6A6A6NMZ7 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.85■□□□□ 0.93
COL6A6A6NMZ7 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A6A6NMZ7 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A6A6NMZ7 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL6A6A6NMZ7 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.83■□□□□ 0.93
COL6A6A6NMZ7 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL6A6A6NMZ7 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
COL6A6A6NMZ7 AL355802.2-201ENST00000402069 882 ntBASIC20.83■□□□□ 0.93
COL6A6A6NMZ7 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.83■□□□□ 0.93
COL6A6A6NMZ7 AL354811.1-201ENST00000610286 706 ntBASIC20.83■□□□□ 0.93
COL6A6A6NMZ7 AC080038.1-201ENST00000611274 1154 ntBASIC20.83■□□□□ 0.93
COL6A6A6NMZ7 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
COL6A6A6NMZ7 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL6A6A6NMZ7 AC006015.1-201ENST00000429970 570 ntBASIC20.83■□□□□ 0.92
COL6A6A6NMZ7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A6A6NMZ7 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A6A6NMZ7 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A6A6NMZ7 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.82■□□□□ 0.92
COL6A6A6NMZ7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A6A6NMZ7 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.82■□□□□ 0.92
COL6A6A6NMZ7 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A6A6NMZ7 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A6A6NMZ7 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A6A6NMZ7 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 MIR3181-201ENST00000578512 73 ntBASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A6A6NMZ7 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms