Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV41A0A0B4J266 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
TRAV41A0A0B4J266 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV41A0A0B4J266 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV41A0A0B4J266 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV41A0A0B4J266 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC18.02■□□□□ 0.48
TRAV41A0A0B4J266 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.02■□□□□ 0.48
TRAV41A0A0B4J266 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV41A0A0B4J266 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.02■□□□□ 0.48
TRAV41A0A0B4J266 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.02■□□□□ 0.48
TRAV41A0A0B4J266 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.02■□□□□ 0.48
TRAV41A0A0B4J266 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.02■□□□□ 0.48
TRAV41A0A0B4J266 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.02■□□□□ 0.48
TRAV41A0A0B4J266 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.02■□□□□ 0.48
TRAV41A0A0B4J266 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV41A0A0B4J266 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV41A0A0B4J266 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV41A0A0B4J266 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV41A0A0B4J266 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
TRAV41A0A0B4J266 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.01■□□□□ 0.47
TRAV41A0A0B4J266 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV41A0A0B4J266 KRT16P3-201ENST00000439127 1283 ntBASIC18.01■□□□□ 0.47
TRAV41A0A0B4J266 MIR6722-201ENST00000617286 78 ntBASIC18.01■□□□□ 0.47
TRAV41A0A0B4J266 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV41A0A0B4J266 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV41A0A0B4J266 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV41A0A0B4J266 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV41A0A0B4J266 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV41A0A0B4J266 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV41A0A0B4J266 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TRAV41A0A0B4J266 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18■□□□□ 0.47
TRAV41A0A0B4J266 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TRAV41A0A0B4J266 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV41A0A0B4J266 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV41A0A0B4J266 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18■□□□□ 0.47
TRAV41A0A0B4J266 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18■□□□□ 0.47
TRAV41A0A0B4J266 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
TRAV41A0A0B4J266 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV41A0A0B4J266 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV41A0A0B4J266 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
TRAV41A0A0B4J266 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV41A0A0B4J266 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV41A0A0B4J266 EXOG-217ENST00000630638 197 ntTSL 5 BASIC17.99■□□□□ 0.47
TRAV41A0A0B4J266 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
TRAV41A0A0B4J266 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
TRAV41A0A0B4J266 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV41A0A0B4J266 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV41A0A0B4J266 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC17.99■□□□□ 0.47
TRAV41A0A0B4J266 GRAMD4P7-201ENST00000578182 1232 ntBASIC17.98■□□□□ 0.47
TRAV41A0A0B4J266 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TRAV41A0A0B4J266 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TRAV41A0A0B4J266 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TRAV41A0A0B4J266 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV41A0A0B4J266 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAV41A0A0B4J266 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV41A0A0B4J266 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV41A0A0B4J266 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV41A0A0B4J266 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 REST-206ENST00000612429 1376 ntTSL 5 BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 REST-207ENST00000616975 1370 ntTSL 5 BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 SHD-204ENST00000599689 1729 ntTSL 5 BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC17.97■□□□□ 0.47
TRAV41A0A0B4J266 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV41A0A0B4J266 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV41A0A0B4J266 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAV41A0A0B4J266 CD72-202ENST00000378430 585 ntTSL 3 BASIC17.96■□□□□ 0.47
TRAV41A0A0B4J266 AL356441.2-201ENST00000443009 864 ntBASIC17.96■□□□□ 0.47
TRAV41A0A0B4J266 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV41A0A0B4J266 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV41A0A0B4J266 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV41A0A0B4J266 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV41A0A0B4J266 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
TRAV41A0A0B4J266 ALDH1A3-203ENST00000557963 1670 ntBASIC17.96■□□□□ 0.47
TRAV41A0A0B4J266 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
TRAV41A0A0B4J266 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV41A0A0B4J266 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV41A0A0B4J266 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV41A0A0B4J266 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV41A0A0B4J266 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC17.95■□□□□ 0.46
TRAV41A0A0B4J266 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV41A0A0B4J266 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
TRAV41A0A0B4J266 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC17.95■□□□□ 0.46
TRAV41A0A0B4J266 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV41A0A0B4J266 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC17.95■□□□□ 0.46
TRAV41A0A0B4J266 AC005703.6-201ENST00000623265 1329 ntBASIC17.95■□□□□ 0.46
TRAV41A0A0B4J266 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV41A0A0B4J266 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV41A0A0B4J266 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV41A0A0B4J266 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV41A0A0B4J266 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms