Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 ST20-AS1-201ENST00000560255 4223 ntBASIC14.57□□□□□ -0.08
VPS4AQ9UN37 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 REXO1L4P-201ENST00000605109 1937 ntBASIC14.56□□□□□ -0.08
VPS4AQ9UN37 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 AL121723.1-201ENST00000445194 1519 ntBASIC14.56□□□□□ -0.08
VPS4AQ9UN37 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 TOMM22P5-201ENST00000416399 439 ntBASIC14.56□□□□□ -0.08
VPS4AQ9UN37 AL162726.2-201ENST00000438986 1017 ntBASIC14.56□□□□□ -0.08
VPS4AQ9UN37 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 AC099548.2-209ENST00000480264 625 ntBASIC14.56□□□□□ -0.08
VPS4AQ9UN37 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 SLC25A47P1-201ENST00000531577 414 ntBASIC14.56□□□□□ -0.08
VPS4AQ9UN37 RARRES2P5-201ENST00000564013 466 ntBASIC14.56□□□□□ -0.08
VPS4AQ9UN37 LINC01115-203ENST00000606068 577 ntBASIC14.56□□□□□ -0.08
VPS4AQ9UN37 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
VPS4AQ9UN37 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms