Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 LINC00528-201ENST00000600723 2160 ntBASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 DUTP3-201ENST00000450025 415 ntBASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC27.94■■■□□ 2.06
SHROOM4Q9ULL8 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 AC006122.1-201ENST00000493323 440 ntBASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 GCOM2-201ENST00000509133 1104 ntBASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 POLD4-208ENST00000532830 904 ntTSL 3 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 AL109954.1-202ENST00000564051 2148 ntBASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC27.93■■■□□ 2.06
SHROOM4Q9ULL8 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 NHP2-202ENST00000314397 599 ntTSL 2 BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 AC026320.2-201ENST00000434379 478 ntBASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 AC018695.6-201ENST00000614011 534 ntBASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM4Q9ULL8 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 AC131206.1-201ENST00000538078 1211 ntBASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 MIR3188-201ENST00000583494 85 ntBASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC27.91■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms