Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 TPT1P11-201ENST00000458482 498 ntBASIC18.63■□□□□ 0.57
SCN11AQ9UI33 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN11AQ9UI33 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 TEKT4P2-202ENST00000559466 1312 ntBASIC18.62■□□□□ 0.57
SCN11AQ9UI33 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 RPL18AP8-201ENST00000486071 528 ntBASIC18.62■□□□□ 0.57
SCN11AQ9UI33 NDUFB10P1-201ENST00000567319 521 ntBASIC18.62■□□□□ 0.57
SCN11AQ9UI33 POR-201ENST00000394893 2532 ntTSL 5 BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC18.62■□□□□ 0.57
SCN11AQ9UI33 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 AC098934.1-203ENST00000442868 1262 ntBASIC18.61■□□□□ 0.57
SCN11AQ9UI33 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 AC002044.2-201ENST00000624910 970 ntBASIC18.61■□□□□ 0.57
SCN11AQ9UI33 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SCN11AQ9UI33 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms