Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 BX088702.1-201ENST00000610784 235 ntBASIC12.69□□□□□ -0.38
COL12A1Q99715 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.69□□□□□ -0.38
COL12A1Q99715 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC12.69□□□□□ -0.38
COL12A1Q99715 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 TLE1P1-201ENST00000422965 589 ntBASIC12.69□□□□□ -0.38
COL12A1Q99715 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 POLR2LP1-206ENST00000444785 187 ntBASIC12.69□□□□□ -0.38
COL12A1Q99715 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC12.69□□□□□ -0.38
COL12A1Q99715 AC022121.1-201ENST00000484584 579 ntBASIC12.69□□□□□ -0.38
COL12A1Q99715 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC12.69□□□□□ -0.38
COL12A1Q99715 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC12.69□□□□□ -0.38
COL12A1Q99715 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC12.69□□□□□ -0.38
COL12A1Q99715 AC006372.4-201ENST00000624122 1543 ntBASIC12.69□□□□□ -0.38
COL12A1Q99715 RARS-210ENST00000626454 177 ntTSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 ZNF436-AS1-201ENST00000335648 2547 ntBASIC12.69□□□□□ -0.38
COL12A1Q99715 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC12.68□□□□□ -0.38
COL12A1Q99715 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
COL12A1Q99715 MIR1226-201ENST00000408658 75 ntBASIC12.68□□□□□ -0.38
COL12A1Q99715 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC12.68□□□□□ -0.38
COL12A1Q99715 ERP29P1-201ENST00000442902 706 ntBASIC12.68□□□□□ -0.38
COL12A1Q99715 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC12.68□□□□□ -0.38
COL12A1Q99715 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC12.68□□□□□ -0.38
COL12A1Q99715 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC12.68□□□□□ -0.38
COL12A1Q99715 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
COL12A1Q99715 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC12.68□□□□□ -0.38
COL12A1Q99715 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC12.68□□□□□ -0.38
COL12A1Q99715 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
COL12A1Q99715 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC12.68□□□□□ -0.38
COL12A1Q99715 MTHFR-217ENST00000641820 1569 ntBASIC12.68□□□□□ -0.38
COL12A1Q99715 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.68□□□□□ -0.38
COL12A1Q99715 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC12.68□□□□□ -0.38
COL12A1Q99715 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC12.68□□□□□ -0.38
COL12A1Q99715 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 BMF-206ENST00000558774 671 ntTSL 3 BASIC12.68□□□□□ -0.38
COL12A1Q99715 COX5A-205ENST00000568517 582 ntTSL 3 BASIC12.68□□□□□ -0.38
COL12A1Q99715 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC12.68□□□□□ -0.38
COL12A1Q99715 APOC1-209ENST00000592885 562 ntTSL 3 BASIC12.68□□□□□ -0.38
COL12A1Q99715 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 STK33-217ENST00000534493 1895 ntTSL 2 BASIC12.68□□□□□ -0.38
COL12A1Q99715 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
COL12A1Q99715 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
COL12A1Q99715 AC067931.2-201ENST00000623655 2003 ntBASIC12.68□□□□□ -0.38
COL12A1Q99715 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC12.68□□□□□ -0.38
COL12A1Q99715 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.68□□□□□ -0.38
COL12A1Q99715 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 MSANTD2P1-201ENST00000445341 1368 ntBASIC12.68□□□□□ -0.38
COL12A1Q99715 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC12.68□□□□□ -0.38
COL12A1Q99715 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL12A1Q99715 PTPA-215ENST00000432124 567 ntTSL 4 BASIC12.68□□□□□ -0.38
COL12A1Q99715 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms