Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 AGGF1P1-201ENST00000509500 2073 ntBASIC14.32□□□□□ -0.12
VPS13AQ96RL7 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 RN7SL578P-201ENST00000477781 283 ntBASIC14.32□□□□□ -0.12
VPS13AQ96RL7 AC120498.5-201ENST00000561757 299 ntBASIC14.32□□□□□ -0.12
VPS13AQ96RL7 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 RHOQP2-201ENST00000449922 579 ntBASIC14.32□□□□□ -0.12
VPS13AQ96RL7 HNRNPA1P16-201ENST00000575692 955 ntBASIC14.32□□□□□ -0.12
VPS13AQ96RL7 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 PIFO-201ENST00000369737 746 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 AC136621.1-201ENST00000624017 2304 ntBASIC14.31□□□□□ -0.12
VPS13AQ96RL7 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.31□□□□□ -0.12
VPS13AQ96RL7 OR51A9P-201ENST00000422578 911 ntBASIC14.31□□□□□ -0.12
VPS13AQ96RL7 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 LY6E-215ENST00000523847 427 ntTSL 3 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13AQ96RL7 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 AC007250.1-201ENST00000608934 338 ntBASIC14.3□□□□□ -0.12
VPS13AQ96RL7 AC010503.4-201ENST00000615487 688 ntBASIC14.3□□□□□ -0.12
VPS13AQ96RL7 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 HLF-202ENST00000430986 1385 ntTSL 2 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 CDK4P1-201ENST00000454213 828 ntBASIC14.3□□□□□ -0.12
VPS13AQ96RL7 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 RPL18AP8-201ENST00000486071 528 ntBASIC14.3□□□□□ -0.12
VPS13AQ96RL7 GCOM2-201ENST00000509133 1104 ntBASIC14.3□□□□□ -0.12
VPS13AQ96RL7 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms