Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AC073869.1-201ENST00000415574 2762 ntBASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 AC092580.3-201ENST00000430932 139 ntBASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 AC190387.1-201ENST00000551683 408 ntBASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 SPDYE12P-201ENST00000618416 771 ntBASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 AL645728.2-202ENST00000641679 227 ntBASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
DEPDC4Q8N2C3 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 AL139317.3-201ENST00000555969 898 ntTSL 2 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 AC138761.1-201ENST00000584393 385 ntBASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 AC027307.3-201ENST00000594262 1100 ntBASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 AC011474.4-201ENST00000623523 2076 ntBASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 REXO1L4P-201ENST00000605109 1937 ntBASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
DEPDC4Q8N2C3 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 AC022144.1-201ENST00000602255 1580 ntBASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms