Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 RPS5-204ENST00000598098 536 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 AC010976.2-201ENST00000609697 852 ntBASIC19.81■□□□□ 0.76
NPHP3Q7Z494 LINC00244-201ENST00000625073 613 ntBASIC19.81■□□□□ 0.76
NPHP3Q7Z494 MME-218ENST00000625667 363 ntTSL 5 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 PLS3-210ENST00000626746 216 ntTSL 4 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 ST5-261ENST00000626808 1071 ntTSL 5 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 MIR566-201ENST00000385187 94 ntBASIC19.8■□□□□ 0.76
NPHP3Q7Z494 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 AC108734.2-201ENST00000420887 1069 ntBASIC19.8■□□□□ 0.76
NPHP3Q7Z494 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 AC026470.1-201ENST00000478038 846 ntBASIC19.8■□□□□ 0.76
NPHP3Q7Z494 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 CD164-210ENST00000512821 964 ntTSL 2 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 AP005117.1-202ENST00000581724 1908 ntBASIC19.8■□□□□ 0.76
NPHP3Q7Z494 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 AC092850.2-201ENST00000623821 2697 ntBASIC19.8■□□□□ 0.76
NPHP3Q7Z494 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
NPHP3Q7Z494 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 AL591471.1-201ENST00000621855 229 ntBASIC19.79■□□□□ 0.76
NPHP3Q7Z494 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 AC092135.3-201ENST00000624151 1846 ntBASIC19.79■□□□□ 0.76
NPHP3Q7Z494 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 AC139712.1-201ENST00000378256 1875 ntBASIC19.79■□□□□ 0.76
NPHP3Q7Z494 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms