Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 FTLP10-202ENST00000505798 471 ntBASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 PUDP-206ENST00000540122 825 ntTSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 NOP2-220ENST00000545915 630 ntTSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 IFT20-216ENST00000588477 774 ntTSL 5 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 AC133552.6-201ENST00000613406 534 ntBASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 AC138951.2-201ENST00000623455 1161 ntBASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
NUP54Q7Z3B4 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.83□□□□□ -0.19
NUP54Q7Z3B4 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
NUP54Q7Z3B4 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.19
NUP54Q7Z3B4 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
NUP54Q7Z3B4 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
NUP54Q7Z3B4 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.83□□□□□ -0.19
NUP54Q7Z3B4 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
NUP54Q7Z3B4 AL136379.1-201ENST00000623471 2642 ntBASIC13.83□□□□□ -0.19
NUP54Q7Z3B4 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 FAM8A4P-201ENST00000435433 1213 ntBASIC13.83□□□□□ -0.2
NUP54Q7Z3B4 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms