Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 AC078991.1-201ENST00000437297 610 ntBASIC14.41□□□□□ -0.1
COL28A1Q2UY09 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 KRT18P43-201ENST00000469825 1281 ntBASIC14.41□□□□□ -0.1
COL28A1Q2UY09 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 AC020922.3-201ENST00000595064 547 ntBASIC14.41□□□□□ -0.1
COL28A1Q2UY09 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 AC092171.5-201ENST00000608012 942 ntBASIC14.41□□□□□ -0.1
COL28A1Q2UY09 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.4□□□□□ -0.1
COL28A1Q2UY09 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 AC021723.1-201ENST00000486306 515 ntBASIC14.4□□□□□ -0.1
COL28A1Q2UY09 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 GMFG-209ENST00000600322 622 ntTSL 5 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 AL805961.1-203ENST00000641078 1258 ntBASIC14.4□□□□□ -0.1
COL28A1Q2UY09 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
COL28A1Q2UY09 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.11
COL28A1Q2UY09 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 AC006335.1-201ENST00000445200 547 ntBASIC14.39□□□□□ -0.11
COL28A1Q2UY09 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 AC106794.1-201ENST00000506935 792 ntBASIC14.39□□□□□ -0.11
COL28A1Q2UY09 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms