Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
HDAC4P56524 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.62■□□□□ 0.09
HDAC4P56524 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.62■□□□□ 0.09
HDAC4P56524 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
HDAC4P56524 AC007969.1-201ENST00000433675 447 ntBASIC15.62■□□□□ 0.09
HDAC4P56524 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.62■□□□□ 0.09
HDAC4P56524 GAPDHP21-201ENST00000450301 1010 ntBASIC15.62■□□□□ 0.09
HDAC4P56524 KRT17P7-201ENST00000451704 1104 ntBASIC15.62■□□□□ 0.09
HDAC4P56524 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HDAC4P56524 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.62■□□□□ 0.09
HDAC4P56524 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HDAC4P56524 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.62■□□□□ 0.09
HDAC4P56524 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
HDAC4P56524 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.62■□□□□ 0.09
HDAC4P56524 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.62■□□□□ 0.09
HDAC4P56524 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.62■□□□□ 0.09
HDAC4P56524 AC244669.2-201ENST00000612320 853 ntBASIC15.62■□□□□ 0.09
HDAC4P56524 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.62■□□□□ 0.09
HDAC4P56524 AC132938.4-201ENST00000623835 848 ntBASIC15.62■□□□□ 0.09
HDAC4P56524 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
HDAC4P56524 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.62■□□□□ 0.09
HDAC4P56524 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.62■□□□□ 0.09
HDAC4P56524 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.62■□□□□ 0.09
HDAC4P56524 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HDAC4P56524 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.62■□□□□ 0.09
HDAC4P56524 AC113367.3-201ENST00000508316 1912 ntBASIC15.62■□□□□ 0.09
HDAC4P56524 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HDAC4P56524 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC15.62■□□□□ 0.09
HDAC4P56524 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.62■□□□□ 0.09
HDAC4P56524 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
HDAC4P56524 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.62■□□□□ 0.09
HDAC4P56524 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HDAC4P56524 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HDAC4P56524 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.62■□□□□ 0.09
HDAC4P56524 SALL4P5-201ENST00000419001 1760 ntBASIC15.62■□□□□ 0.09
HDAC4P56524 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.62■□□□□ 0.09
HDAC4P56524 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HDAC4P56524 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
HDAC4P56524 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 INE2-201ENST00000630399 1874 ntBASIC15.61■□□□□ 0.09
HDAC4P56524 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.61■□□□□ 0.09
HDAC4P56524 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC15.61■□□□□ 0.09
HDAC4P56524 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
HDAC4P56524 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
HDAC4P56524 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 AC005912.2-201ENST00000619492 2400 ntBASIC15.61■□□□□ 0.09
HDAC4P56524 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.61■□□□□ 0.09
HDAC4P56524 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.61■□□□□ 0.09
HDAC4P56524 TLE1P1-201ENST00000422965 589 ntBASIC15.61■□□□□ 0.09
HDAC4P56524 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.61■□□□□ 0.09
HDAC4P56524 AL590640.2-201ENST00000457038 527 ntBASIC15.61■□□□□ 0.09
HDAC4P56524 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.61■□□□□ 0.09
HDAC4P56524 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.61■□□□□ 0.09
HDAC4P56524 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.61■□□□□ 0.09
HDAC4P56524 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 ECM1P1-201ENST00000604092 1279 ntBASIC15.61■□□□□ 0.09
HDAC4P56524 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.61■□□□□ 0.09
HDAC4P56524 AC138466.3-201ENST00000619983 221 ntBASIC15.61■□□□□ 0.09
HDAC4P56524 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.61■□□□□ 0.09
HDAC4P56524 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 AC005089.1-201ENST00000619486 2241 ntBASIC15.61■□□□□ 0.09
HDAC4P56524 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
HDAC4P56524 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
HDAC4P56524 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.61■□□□□ 0.09
HDAC4P56524 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC4P56524 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
HDAC4P56524 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.6■□□□□ 0.09
HDAC4P56524 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC15.6■□□□□ 0.09
HDAC4P56524 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
HDAC4P56524 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC4P56524 MYO15B-237ENST00000642007 4893 ntBASIC15.6■□□□□ 0.09
HDAC4P56524 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC4P56524 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC4P56524 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC4P56524 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.6■□□□□ 0.09
HDAC4P56524 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.6■□□□□ 0.09
HDAC4P56524 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms