Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
FOXA1P55317 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
FOXA1P55317 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA1P55317 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
FOXA1P55317 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
FOXA1P55317 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
FOXA1P55317 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.46□□□□□ -0.09
FOXA1P55317 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA1P55317 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.46□□□□□ -0.09
FOXA1P55317 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.46□□□□□ -0.09
FOXA1P55317 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.46□□□□□ -0.09
FOXA1P55317 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA1P55317 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.46□□□□□ -0.09
FOXA1P55317 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.46□□□□□ -0.09
FOXA1P55317 MYADML-201ENST00000474610 2147 ntBASIC14.46□□□□□ -0.09
FOXA1P55317 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
FOXA1P55317 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.46□□□□□ -0.09
FOXA1P55317 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA1P55317 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.46□□□□□ -0.09
FOXA1P55317 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
FOXA1P55317 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.46□□□□□ -0.09
FOXA1P55317 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.46□□□□□ -0.09
FOXA1P55317 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA1P55317 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.46□□□□□ -0.09
FOXA1P55317 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA1P55317 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA1P55317 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.46□□□□□ -0.1
FOXA1P55317 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA1P55317 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA1P55317 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA1P55317 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA1P55317 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA1P55317 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
FOXA1P55317 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA1P55317 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
FOXA1P55317 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
FOXA1P55317 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
FOXA1P55317 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
FOXA1P55317 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA1P55317 RN7SL832P-201ENST00000607781 1756 ntBASIC14.45□□□□□ -0.1
FOXA1P55317 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
FOXA1P55317 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
FOXA1P55317 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA1P55317 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 SOCS2P1-201ENST00000417727 557 ntBASIC14.45□□□□□ -0.1
FOXA1P55317 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.45□□□□□ -0.1
FOXA1P55317 AC007969.1-201ENST00000433675 447 ntBASIC14.45□□□□□ -0.1
FOXA1P55317 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA1P55317 GIMAP3P-201ENST00000495150 836 ntBASIC14.45□□□□□ -0.1
FOXA1P55317 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
FOXA1P55317 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.45□□□□□ -0.1
FOXA1P55317 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA1P55317 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.45□□□□□ -0.1
FOXA1P55317 CHCHD2P3-201ENST00000603038 451 ntBASIC14.45□□□□□ -0.1
FOXA1P55317 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA1P55317 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
FOXA1P55317 INE2-201ENST00000630399 1874 ntBASIC14.45□□□□□ -0.1
FOXA1P55317 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
FOXA1P55317 OR2I1P-209ENST00000641730 5365 ntBASIC14.45□□□□□ -0.1
FOXA1P55317 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
FOXA1P55317 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.45□□□□□ -0.1
FOXA1P55317 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA1P55317 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
FOXA1P55317 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXA1P55317 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
FOXA1P55317 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms