Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 FAM90A5P-201ENST00000528738 1395 ntBASIC15.52■□□□□ 0.08
COL4A4P53420 FAM90A14P-201ENST00000530386 1395 ntBASIC15.52■□□□□ 0.08
COL4A4P53420 FAM90A13P-201ENST00000534703 1395 ntBASIC15.52■□□□□ 0.08
COL4A4P53420 MRPL37P1-201ENST00000592451 1337 ntBASIC15.52■□□□□ 0.08
COL4A4P53420 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A4P53420 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
COL4A4P53420 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A4P53420 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A4P53420 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC15.52■□□□□ 0.08
COL4A4P53420 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.52■□□□□ 0.08
COL4A4P53420 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC15.52■□□□□ 0.08
COL4A4P53420 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC15.52■□□□□ 0.08
COL4A4P53420 MME-218ENST00000625667 363 ntTSL 5 BASIC15.52■□□□□ 0.08
COL4A4P53420 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC15.52■□□□□ 0.08
COL4A4P53420 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC15.52■□□□□ 0.08
COL4A4P53420 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A4P53420 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A4P53420 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A4P53420 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A4P53420 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.52■□□□□ 0.07
COL4A4P53420 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.52■□□□□ 0.07
COL4A4P53420 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC15.52■□□□□ 0.07
COL4A4P53420 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A4P53420 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A4P53420 SALL4P5-201ENST00000419001 1760 ntBASIC15.52■□□□□ 0.07
COL4A4P53420 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A4P53420 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A4P53420 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A4P53420 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A4P53420 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
COL4A4P53420 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
COL4A4P53420 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.51■□□□□ 0.07
COL4A4P53420 KRT8P28-201ENST00000433288 1390 ntBASIC15.51■□□□□ 0.07
COL4A4P53420 CICP14-201ENST00000629111 2732 ntBASIC15.51■□□□□ 0.07
COL4A4P53420 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
COL4A4P53420 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 UROS-201ENST00000368774 744 ntTSL 2 BASIC15.51■□□□□ 0.07
COL4A4P53420 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC15.51■□□□□ 0.07
COL4A4P53420 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 AC009560.1-201ENST00000620208 434 ntBASIC15.51■□□□□ 0.07
COL4A4P53420 PLS3-210ENST00000626746 216 ntTSL 4 BASIC15.51■□□□□ 0.07
COL4A4P53420 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC15.51■□□□□ 0.07
COL4A4P53420 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
COL4A4P53420 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.51■□□□□ 0.07
COL4A4P53420 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
COL4A4P53420 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.51■□□□□ 0.07
COL4A4P53420 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 AL354702.1-201ENST00000442006 1960 ntBASIC15.51■□□□□ 0.07
COL4A4P53420 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC15.51■□□□□ 0.07
COL4A4P53420 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC15.51■□□□□ 0.07
COL4A4P53420 HYMAI-201ENST00000635591 3347 ntBASIC15.51■□□□□ 0.07
COL4A4P53420 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
COL4A4P53420 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
COL4A4P53420 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
COL4A4P53420 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.51■□□□□ 0.07
COL4A4P53420 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 BAK1P1-201ENST00000317045 636 ntBASIC15.51■□□□□ 0.07
COL4A4P53420 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
COL4A4P53420 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
COL4A4P53420 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC15.51■□□□□ 0.07
COL4A4P53420 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.51■□□□□ 0.07
COL4A4P53420 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 FAM86KP-201ENST00000509817 987 ntBASIC15.51■□□□□ 0.07
COL4A4P53420 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A4P53420 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC15.51■□□□□ 0.07
COL4A4P53420 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
COL4A4P53420 RN7SL665P-201ENST00000578793 300 ntBASIC15.51■□□□□ 0.07
COL4A4P53420 AP005264.6-204ENST00000588436 719 ntBASIC15.51■□□□□ 0.07
COL4A4P53420 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC15.51■□□□□ 0.07
COL4A4P53420 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.51■□□□□ 0.07
COL4A4P53420 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A4P53420 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A4P53420 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
COL4A4P53420 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A4P53420 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A4P53420 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
COL4A4P53420 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A4P53420 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms