Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
RFC4P35249 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
RFC4P35249 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC18.48■□□□□ 0.55
RFC4P35249 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC18.48■□□□□ 0.55
RFC4P35249 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.48■□□□□ 0.55
RFC4P35249 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
RFC4P35249 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC18.48■□□□□ 0.55
RFC4P35249 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 BCAS2P2-201ENST00000425064 674 ntBASIC18.48■□□□□ 0.55
RFC4P35249 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 DPY19L2P5-201ENST00000456300 331 ntBASIC18.48■□□□□ 0.55
RFC4P35249 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC18.48■□□□□ 0.55
RFC4P35249 RNA5SP417-201ENST00000516459 108 ntBASIC18.48■□□□□ 0.55
RFC4P35249 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC18.48■□□□□ 0.55
RFC4P35249 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC18.48■□□□□ 0.55
RFC4P35249 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
RFC4P35249 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC18.48■□□□□ 0.55
RFC4P35249 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 AC068587.6-202ENST00000641839 5619 ntBASIC18.48■□□□□ 0.55
RFC4P35249 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
RFC4P35249 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
RFC4P35249 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
RFC4P35249 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFC4P35249 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.47■□□□□ 0.55
RFC4P35249 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.47■□□□□ 0.55
RFC4P35249 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
RFC4P35249 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
RFC4P35249 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
RFC4P35249 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC18.47■□□□□ 0.55
RFC4P35249 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
RFC4P35249 AC024293.1-201ENST00000467930 498 ntBASIC18.47■□□□□ 0.55
RFC4P35249 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC18.47■□□□□ 0.55
RFC4P35249 LINC00634-202ENST00000505157 222 ntBASIC18.47■□□□□ 0.55
RFC4P35249 AC026410.1-201ENST00000507366 1101 ntBASIC18.47■□□□□ 0.55
RFC4P35249 RPS23-204ENST00000507980 836 ntTSL 2 BASIC18.47■□□□□ 0.55
RFC4P35249 MIR4472-1-201ENST00000584349 80 ntBASIC18.47■□□□□ 0.55
RFC4P35249 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC18.47■□□□□ 0.55
RFC4P35249 AC087481.3-201ENST00000602886 1894 ntBASIC18.47■□□□□ 0.55
RFC4P35249 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.47■□□□□ 0.55
RFC4P35249 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
RFC4P35249 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC18.47■□□□□ 0.55
RFC4P35249 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.47■□□□□ 0.55
RFC4P35249 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.47■□□□□ 0.55
RFC4P35249 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.47■□□□□ 0.55
RFC4P35249 MRPL37P1-201ENST00000592451 1337 ntBASIC18.47■□□□□ 0.55
RFC4P35249 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC18.47■□□□□ 0.55
RFC4P35249 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFC4P35249 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC18.46■□□□□ 0.55
RFC4P35249 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC18.46■□□□□ 0.55
RFC4P35249 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 GUSBP10-201ENST00000417412 665 ntBASIC18.46■□□□□ 0.55
RFC4P35249 PSMD4P1-201ENST00000433951 1109 ntBASIC18.46■□□□□ 0.55
RFC4P35249 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC18.46■□□□□ 0.55
RFC4P35249 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC18.46■□□□□ 0.55
RFC4P35249 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC18.46■□□□□ 0.55
RFC4P35249 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
RFC4P35249 AC009093.10-201ENST00000641956 1442 ntBASIC18.46■□□□□ 0.55
RFC4P35249 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.46■□□□□ 0.55
RFC4P35249 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFC4P35249 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 6.8 ms