Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SIX3O95343 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SIX3O95343 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SIX3O95343 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 MIR661-201ENST00000384842 89 ntBASIC14.62□□□□□ -0.07
SIX3O95343 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
SIX3O95343 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.62□□□□□ -0.07
SIX3O95343 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.62□□□□□ -0.07
SIX3O95343 MYCLP2-201ENST00000449268 967 ntBASIC14.62□□□□□ -0.07
SIX3O95343 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.62□□□□□ -0.07
SIX3O95343 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
SIX3O95343 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.62□□□□□ -0.07
SIX3O95343 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.62□□□□□ -0.07
SIX3O95343 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 AC004466.1-201ENST00000599515 1080 ntBASIC14.62□□□□□ -0.07
SIX3O95343 AC133539.2-201ENST00000604757 467 ntBASIC14.62□□□□□ -0.07
SIX3O95343 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
SIX3O95343 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SIX3O95343 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
SIX3O95343 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 SALL4P5-201ENST00000419001 1760 ntBASIC14.62□□□□□ -0.07
SIX3O95343 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 AC092135.3-201ENST00000624151 1846 ntBASIC14.62□□□□□ -0.07
SIX3O95343 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SIX3O95343 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
SIX3O95343 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.62□□□□□ -0.07
SIX3O95343 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SIX3O95343 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.61□□□□□ -0.07
SIX3O95343 LRRC59-203ENST00000576448 1531 ntBASIC14.61□□□□□ -0.07
SIX3O95343 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.61□□□□□ -0.07
SIX3O95343 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.61□□□□□ -0.07
SIX3O95343 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SIX3O95343 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
SIX3O95343 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SIX3O95343 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.61□□□□□ -0.07
SIX3O95343 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.61□□□□□ -0.07
SIX3O95343 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.61□□□□□ -0.07
SIX3O95343 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 TSPY16P-201ENST00000449843 468 ntBASIC14.61□□□□□ -0.07
SIX3O95343 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.61□□□□□ -0.07
SIX3O95343 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SIX3O95343 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.61□□□□□ -0.07
SIX3O95343 AC027796.2-201ENST00000575326 344 ntBASIC14.61□□□□□ -0.07
SIX3O95343 MIR3197-201ENST00000582241 73 ntBASIC14.61□□□□□ -0.07
SIX3O95343 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.61□□□□□ -0.07
SIX3O95343 TMEM261P1-201ENST00000604899 340 ntBASIC14.61□□□□□ -0.07
SIX3O95343 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.61□□□□□ -0.07
SIX3O95343 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.61□□□□□ -0.07
SIX3O95343 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SIX3O95343 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.61□□□□□ -0.07
SIX3O95343 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
SIX3O95343 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SIX3O95343 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms