Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CDKL5O76039 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CDKL5O76039 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CDKL5O76039 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.36■□□□□ 0.37
CDKL5O76039 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.36■□□□□ 0.37
CDKL5O76039 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.36■□□□□ 0.37
CDKL5O76039 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.36■□□□□ 0.37
CDKL5O76039 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.36■□□□□ 0.37
CDKL5O76039 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CDKL5O76039 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC17.36■□□□□ 0.37
CDKL5O76039 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.36■□□□□ 0.37
CDKL5O76039 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC17.36■□□□□ 0.37
CDKL5O76039 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 AP001267.2-201ENST00000532619 2086 ntBASIC17.36■□□□□ 0.37
CDKL5O76039 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.36■□□□□ 0.37
CDKL5O76039 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.36■□□□□ 0.37
CDKL5O76039 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
CDKL5O76039 AC007326.2-201ENST00000624224 7579 ntBASIC17.36■□□□□ 0.37
CDKL5O76039 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 AC011840.2-201ENST00000563063 1520 ntBASIC17.36■□□□□ 0.37
CDKL5O76039 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDKL5O76039 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC17.36■□□□□ 0.37
CDKL5O76039 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CDKL5O76039 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CDKL5O76039 AC092933.1-201ENST00000393644 945 ntBASIC17.35■□□□□ 0.37
CDKL5O76039 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 BCRP2-202ENST00000447763 634 ntBASIC17.35■□□□□ 0.37
CDKL5O76039 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 GCOM2-201ENST00000509133 1104 ntBASIC17.35■□□□□ 0.37
CDKL5O76039 BCRP6-201ENST00000510112 632 ntBASIC17.35■□□□□ 0.37
CDKL5O76039 BCRP7-201ENST00000511549 544 ntBASIC17.35■□□□□ 0.37
CDKL5O76039 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 BTNL10-201ENST00000595971 695 ntBASIC17.35■□□□□ 0.37
CDKL5O76039 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.35■□□□□ 0.37
CDKL5O76039 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.35■□□□□ 0.37
CDKL5O76039 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.35■□□□□ 0.37
CDKL5O76039 FKBP4P6-201ENST00000457486 1332 ntBASIC17.35■□□□□ 0.37
CDKL5O76039 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CDKL5O76039 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CDKL5O76039 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 AC015656.1-201ENST00000624209 3578 ntBASIC17.35■□□□□ 0.37
CDKL5O76039 SBF1P1-201ENST00000444527 5631 ntBASIC17.35■□□□□ 0.37
CDKL5O76039 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CDKL5O76039 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDKL5O76039 KCP-203ENST00000610776 5108 ntTSL 5 BASIC17.35■□□□□ 0.37
CDKL5O76039 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
CDKL5O76039 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.34■□□□□ 0.37
CDKL5O76039 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CDKL5O76039 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.34■□□□□ 0.37
CDKL5O76039 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.34■□□□□ 0.37
CDKL5O76039 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms