Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CACNA1FO60840 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC18.36■□□□□ 0.53
CACNA1FO60840 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC18.36■□□□□ 0.53
CACNA1FO60840 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CACNA1FO60840 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CACNA1FO60840 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CACNA1FO60840 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CACNA1FO60840 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CACNA1FO60840 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC18.36■□□□□ 0.53
CACNA1FO60840 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CACNA1FO60840 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CACNA1FO60840 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC18.36■□□□□ 0.53
CACNA1FO60840 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC18.36■□□□□ 0.53
CACNA1FO60840 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CACNA1FO60840 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CACNA1FO60840 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CACNA1FO60840 FNTAP2-201ENST00000430308 634 ntBASIC18.36■□□□□ 0.53
CACNA1FO60840 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CACNA1FO60840 DUTP3-201ENST00000450025 415 ntBASIC18.36■□□□□ 0.53
CACNA1FO60840 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC18.36■□□□□ 0.53
CACNA1FO60840 KRT8P1-201ENST00000557533 1207 ntBASIC18.36■□□□□ 0.53
CACNA1FO60840 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC18.36■□□□□ 0.53
CACNA1FO60840 AC026803.1-201ENST00000569130 274 ntBASIC18.36■□□□□ 0.53
CACNA1FO60840 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC18.36■□□□□ 0.53
CACNA1FO60840 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC18.36■□□□□ 0.53
CACNA1FO60840 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.36■□□□□ 0.53
CACNA1FO60840 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC18.36■□□□□ 0.53
CACNA1FO60840 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CACNA1FO60840 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC18.36■□□□□ 0.53
CACNA1FO60840 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC18.36■□□□□ 0.53
CACNA1FO60840 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CACNA1FO60840 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CACNA1FO60840 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CACNA1FO60840 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC18.35■□□□□ 0.53
CACNA1FO60840 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC18.35■□□□□ 0.53
CACNA1FO60840 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC18.35■□□□□ 0.53
CACNA1FO60840 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CACNA1FO60840 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC18.35■□□□□ 0.53
CACNA1FO60840 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC18.35■□□□□ 0.53
CACNA1FO60840 AC093752.3-201ENST00000567343 901 ntBASIC18.35■□□□□ 0.53
CACNA1FO60840 AL021578.1-201ENST00000613646 709 ntBASIC18.35■□□□□ 0.53
CACNA1FO60840 TP53-221ENST00000615910 1149 ntTSL 5 BASIC18.35■□□□□ 0.53
CACNA1FO60840 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
CACNA1FO60840 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CACNA1FO60840 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CACNA1FO60840 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC18.35■□□□□ 0.53
CACNA1FO60840 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.35■□□□□ 0.53
CACNA1FO60840 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
CACNA1FO60840 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CACNA1FO60840 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC18.35■□□□□ 0.53
CACNA1FO60840 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CACNA1FO60840 AC105129.2-201ENST00000559536 390 ntBASIC18.35■□□□□ 0.53
CACNA1FO60840 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC18.35■□□□□ 0.53
CACNA1FO60840 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
CACNA1FO60840 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CACNA1FO60840 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CACNA1FO60840 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC18.34■□□□□ 0.53
CACNA1FO60840 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC18.34■□□□□ 0.53
CACNA1FO60840 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 FRMPD2B-201ENST00000431305 1347 ntBASIC18.34■□□□□ 0.53
CACNA1FO60840 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CACNA1FO60840 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 KRT8P19-201ENST00000551916 1455 ntBASIC18.34■□□□□ 0.53
CACNA1FO60840 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC18.34■□□□□ 0.53
CACNA1FO60840 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC18.34■□□□□ 0.53
CACNA1FO60840 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC18.34■□□□□ 0.53
CACNA1FO60840 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC18.34■□□□□ 0.53
CACNA1FO60840 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC18.34■□□□□ 0.53
CACNA1FO60840 PPA1-206ENST00000625364 644 ntTSL 5 BASIC18.34■□□□□ 0.53
CACNA1FO60840 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms