Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
TRIM38O00635 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
TRIM38O00635 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
TRIM38O00635 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM38O00635 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
TRIM38O00635 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.09■□□□□ 0.01
TRIM38O00635 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC15.09■□□□□ 0.01
TRIM38O00635 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 AC006033.1-201ENST00000440505 426 ntBASIC15.09■□□□□ 0.01
TRIM38O00635 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.09■□□□□ 0.01
TRIM38O00635 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.09■□□□□ 0.01
TRIM38O00635 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM38O00635 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM38O00635 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM38O00635 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.09■□□□□ 0.01
TRIM38O00635 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM38O00635 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.09■□□□□ 0.01
TRIM38O00635 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM38O00635 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
TRIM38O00635 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
TRIM38O00635 KRT8P35-201ENST00000483942 1338 ntBASIC15.09■□□□□ 0.01
TRIM38O00635 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM38O00635 AC041040.2-201ENST00000622926 2899 ntBASIC15.09■□□□□ 0.01
TRIM38O00635 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
TRIM38O00635 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM38O00635 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
TRIM38O00635 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
TRIM38O00635 CICP14-201ENST00000629111 2732 ntBASIC15.08■□□□□ 0.01
TRIM38O00635 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRIM38O00635 AC005840.4-201ENST00000541242 2494 ntBASIC15.08■□□□□ 0.01
TRIM38O00635 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
TRIM38O00635 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRIM38O00635 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.08■□□□□ 0
TRIM38O00635 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.08■□□□□ 0
TRIM38O00635 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRIM38O00635 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.08■□□□□ 0
TRIM38O00635 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC15.08■□□□□ 0
TRIM38O00635 AL590640.2-201ENST00000457038 527 ntBASIC15.08■□□□□ 0
TRIM38O00635 KRT8P13-201ENST00000463294 1010 ntBASIC15.08■□□□□ 0
TRIM38O00635 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC15.08■□□□□ 0
TRIM38O00635 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.08■□□□□ 0
TRIM38O00635 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.08■□□□□ 0
TRIM38O00635 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC15.08■□□□□ 0
TRIM38O00635 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 MIR4741-201ENST00000579822 90 ntBASIC15.08■□□□□ 0
TRIM38O00635 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.08■□□□□ 0
TRIM38O00635 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.08■□□□□ 0
TRIM38O00635 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.08■□□□□ 0
TRIM38O00635 BX539320.1-201ENST00000623759 877 ntBASIC15.08■□□□□ 0
TRIM38O00635 AC132938.4-201ENST00000623835 848 ntBASIC15.08■□□□□ 0
TRIM38O00635 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRIM38O00635 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
TRIM38O00635 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
TRIM38O00635 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 AHCYP2-201ENST00000430630 1300 ntBASIC15.08■□□□□ 0
TRIM38O00635 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM38O00635 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.08■□□□□ 0
TRIM38O00635 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms