Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 SSR4P1-203ENST00000599569 2260 ntBASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 SERF2-206ENST00000409291 807 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 IDS-203ENST00000428056 1213 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 REEP5-205ENST00000504247 480 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 IGHVIII-5-2-201ENST00000522505 261 ntBASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 POLD4-208ENST00000532830 904 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 AC107464.3-201ENST00000609172 737 ntBASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 MARK2P16-201ENST00000605714 1723 ntBASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 HIST2H2BA-201ENST00000412169 381 ntBASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 AL139008.1-201ENST00000437894 228 ntBASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 AL022344.2-201ENST00000568976 968 ntBASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 RNF146-211ENST00000609447 607 ntTSL 4 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 AC105137.3-201ENST00000617588 984 ntBASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 FO393412.1-201ENST00000619841 382 ntBASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC87Q9NVE4 HLA-DQB1-202ENST00000399079 1501 ntBASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 LYPLA2P1-203ENST00000447689 696 ntBASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 C2orf69P1-201ENST00000563532 1093 ntBASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC87Q9NVE4 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms